PDB entry 5ymy

View 5ymy on RCSB PDB site
Description: The structure of the complex between Rpn13 and K48-diUb
Class: protein binding/signaling protein
Keywords: complex, ubiquitin receptor, compacted, PROTEIN BINDING-SIGNALING PROTEIN complex
Deposited on 2017-10-22, released 2019-03-13
The last revision prior to the SCOPe 2.07 freeze date was dated 2019-03-13, with a file datestamp of 2019-03-08.
Experiment type: NMR
Resolution: N/A
R-factor: N/A
AEROSPACI score: 0.04 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Ubiquitin
    Species: Homo sapiens [TaxId:9606]
    Gene: UBB
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d5ymya_
  • Chain 'B':
    Compound: Ubiquitin
    Species: Homo sapiens [TaxId:9606]
    Gene: UBB
    Database cross-references and differences (RAF-indexed):
    • Uniprot P0CG47 (0-75)
      • engineered mutation (47)
    Domains in SCOPe 2.07: d5ymyb_
  • Chain 'C':
    Compound: Proteasomal ubiquitin receptor ADRM1
    Species: Homo sapiens [TaxId:9606]
    Gene: Adrm1, Gp110
    Database cross-references and differences (RAF-indexed):

PDB Chain Sequences:

  • Chain 'A':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >5ymyA (A:)
mqifvktltgktitlevepsdtienvkakiqdkegippdqqrlifagkqledgrtlsdyn
iqkestlhlvlrlrgg

  • Chain 'B':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >5ymyB (B:)
mqifvktltgktitlevepsdtienvkakiqdkegippdqqrlifagrqledgrtlsdyn
iqkestlhlvlrlrgg

  • Chain 'C':
    No sequence available.