PDB entry 5ym6

View 5ym6 on RCSB PDB site
Description: Crystal Structure of porcine delta coronavirus nsp9
Class: RNA binding protein
Keywords: Porcine delta coronavirus, RNA binding protein, nsp9
Deposited on 2017-10-21, released 2018-06-13
The last revision prior to the SCOPe 2.08 freeze date was dated 2019-07-03, with a file datestamp of 2019-06-28.
Experiment type: XRAY
Resolution: 1.8 Å
R-factor: N/A
AEROSPACI score: 0.37 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: nsp9
    Species: Porcine coronavirus HKU15 [TaxId:1159905]
    Gene: orf1ab
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d5ym6a_
  • Chain 'B':
    Compound: nsp9
    Species: Porcine coronavirus HKU15 [TaxId:1159905]
    Gene: orf1ab
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d5ym6b_
  • Chain 'C':
    Compound: nsp9
    Species: Porcine coronavirus HKU15 [TaxId:1159905]
    Gene: orf1ab
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d5ym6c_
  • Chain 'D':
    Compound: nsp9
    Species: Porcine coronavirus HKU15 [TaxId:1159905]
    Gene: orf1ab
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d5ym6d_
  • Heterogens: HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >5ym6A (A:)
nnelclrnvftaqntaqdfngnestvksfyvtrtgkkilvaitstkdnlktvtcltetgk
tvlnldppmrfahtvggkqsvvylyfiqnisslnrgmvighisettilqhhhhhh

    Sequence, based on observed residues (ATOM records): (download) 
    >5ym6A (A:)
nnelclrnvftaqntaqdfngnestvksfyvtrtgkkilvaitstkdnlktvtcltetgk
tvlnldppmrfsvvylyfiqnisslnrgmvighiset

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >5ym6B (B:)
nnelclrnvftaqntaqdfngnestvksfyvtrtgkkilvaitstkdnlktvtcltetgk
tvlnldppmrfahtvggkqsvvylyfiqnisslnrgmvighisettilqhhhhhh

    Sequence, based on observed residues (ATOM records): (download) 
    >5ym6B (B:)
nnelclrnvftaqntaqdfngnestvksfyvtrtgkkilvaitstkdnlktvtclttgkt
vlnldppmrfaqsvvylyfiqnisslnrgmvighisett

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >5ym6C (C:)
nnelclrnvftaqntaqdfngnestvksfyvtrtgkkilvaitstkdnlktvtcltetgk
tvlnldppmrfahtvggkqsvvylyfiqnisslnrgmvighisettilqhhhhhh

    Sequence, based on observed residues (ATOM records): (download) 
    >5ym6C (C:)
nnelclrnvftaqntaqdfngnestvksfyvtrtgkkilvaitstkdnlktvtclttgkt
vlnldppmrfahsvvylyfiqnisslnrgmvighisett

  • Chain 'D':
    Sequence, based on SEQRES records: (download) 
    >5ym6D (D:)
nnelclrnvftaqntaqdfngnestvksfyvtrtgkkilvaitstkdnlktvtcltetgk
tvlnldppmrfahtvggkqsvvylyfiqnisslnrgmvighisettilqhhhhhh

    Sequence, based on observed residues (ATOM records): (download) 
    >5ym6D (D:)
nnelclrnvftaqntaqdfngnestvksfyvtrkkilvaitstkdnlktvtcltetgktv
lnldppmrfsvvylyfiqnisslnrgmvighiset