PDB entry 5yij

View 5yij on RCSB PDB site
Description: Structure of a Legionella effector with substrates
Class: transferase/protein binding
Keywords: transferase, complex, alpha-helical domain, TRANSFERASE-PROTEIN BINDING complex
Deposited on 2017-10-05, released 2018-05-30
The last revision prior to the SCOPe 2.07 freeze date was dated 2018-05-30, with a file datestamp of 2018-05-25.
Experiment type: XRAY
Resolution: 3.18 Å
R-factor: N/A
AEROSPACI score: 0.12 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: SdeA
    Species: Legionella pneumophila [TaxId:446]
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q6RCR0 (0-959)
      • expression tag (960-961)
  • Chain 'C':
    Compound: Ubiquitin
    Species: Homo sapiens [TaxId:9606]
    Gene: UBB
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d5yijc_
  • Chain 'D':
    Compound: Ubiquitin
    Species: Homo sapiens [TaxId:9606]
    Gene: UBB
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d5yijd_
  • Chain 'G':
    Compound: Ubiquitin
    Species: Homo sapiens [TaxId:9606]
    Gene: UBB
    Database cross-references and differences (RAF-indexed):
    • Uniprot P0CG47 (2-77)
      • expression tag (1)
    Domains in SCOPe 2.07: d5yijg1, d5yijg2
  • Heterogens: NAI

PDB Chain Sequences:

  • Chain 'A':
    No sequence available.

  • Chain 'C':
    Sequence, based on SEQRES records: (download)
    >5yijC (C:)
    shmqifvktltgktitlevepsdtienvkakiqdkegippdqqrlifagkqledgrtlsd
    yniqkestlhlvlrlrgg
    

    Sequence, based on observed residues (ATOM records): (download)
    >5yijC (C:)
    mqifvktltgktitlevepsdtienvkakiqdkegippdqqrlifagkqledgrtlsdyn
    iqkestlhlvl
    

  • Chain 'D':
    Sequence, based on SEQRES records: (download)
    >5yijD (D:)
    shmqifvktltgktitlevepsdtienvkakiqdkegippdqqrlifagkqledgrtlsd
    yniqkestlhlvlrlrgg
    

    Sequence, based on observed residues (ATOM records): (download)
    >5yijD (D:)
    mqifvktltgktitlevepsdtienvkakiqdkegippdqqrlifagkqledgrtlsdyn
    iqkestlhlvlrlrgg
    

  • Chain 'G':
    Sequence, based on SEQRES records: (download)
    >5yijG (G:)
    shmqifvktltgktitlevepsdtienvkakiqdkegippdqqrlifagkqledgrtlsd
    yniqkestlhlvlrlrgg
    

    Sequence, based on observed residues (ATOM records): (download)
    >5yijG (G:)
    hmqifvktltgktitlevepsdtienvkakiqdkegippdqqrlifagkqledgrtlsdy
    niqkestlhlvlrlrgg