PDB entry 5yhm

View 5yhm on RCSB PDB site
Description: Crystal structure of dehydroquinate dehydratase with tris induced oligomerisation at 1.907 Angstrom resolution
Class: lyase
Keywords: lyase
Deposited on 2017-09-28, released 2017-10-25
The last revision prior to the SCOPe 2.08 freeze date was dated 2017-10-25, with a file datestamp of 2017-10-20.
Experiment type: XRAY
Resolution: 1.91 Å
R-factor: N/A
AEROSPACI score: 0.33 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: 3-dehydroquinate dehydratase
    Species: Acinetobacter baumannii (strain ATCC 17978 / CIP 53.77 / LMG 1025 / NCDC KC755 / 5377) [TaxId:400667]
    Gene: aroQ, A1S_2009
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d5yhma_
  • Chain 'B':
    Compound: 3-dehydroquinate dehydratase
    Species: Acinetobacter baumannii (strain ATCC 17978 / CIP 53.77 / LMG 1025 / NCDC KC755 / 5377) [TaxId:400667]
    Gene: aroQ, A1S_2009
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d5yhmb_
  • Chain 'C':
    Compound: 3-dehydroquinate dehydratase
    Species: Acinetobacter baumannii (strain ATCC 17978 / CIP 53.77 / LMG 1025 / NCDC KC755 / 5377) [TaxId:400667]
    Gene: aroQ, A1S_2009
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d5yhmc_
  • Chain 'D':
    Compound: 3-dehydroquinate dehydratase
    Species: Acinetobacter baumannii (strain ATCC 17978 / CIP 53.77 / LMG 1025 / NCDC KC755 / 5377) [TaxId:400667]
    Gene: aroQ, A1S_2009
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d5yhmd_
  • Chain 'E':
    Compound: 3-dehydroquinate dehydratase
    Species: Acinetobacter baumannii (strain ATCC 17978 / CIP 53.77 / LMG 1025 / NCDC KC755 / 5377) [TaxId:400667]
    Gene: aroQ, A1S_2009
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d5yhme_
  • Chain 'F':
    Compound: 3-dehydroquinate dehydratase
    Species: Acinetobacter baumannii (strain ATCC 17978 / CIP 53.77 / LMG 1025 / NCDC KC755 / 5377) [TaxId:400667]
    Gene: aroQ, A1S_2009
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d5yhmf_
  • Chain 'G':
    Compound: 3-dehydroquinate dehydratase
    Species: Acinetobacter baumannii (strain ATCC 17978 / CIP 53.77 / LMG 1025 / NCDC KC755 / 5377) [TaxId:400667]
    Gene: aroQ, A1S_2009
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d5yhmg_
  • Chain 'H':
    Compound: 3-dehydroquinate dehydratase
    Species: Acinetobacter baumannii (strain ATCC 17978 / CIP 53.77 / LMG 1025 / NCDC KC755 / 5377) [TaxId:400667]
    Gene: aroQ, A1S_2009
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d5yhmh_
  • Chain 'I':
    Compound: 3-dehydroquinate dehydratase
    Species: Acinetobacter baumannii (strain ATCC 17978 / CIP 53.77 / LMG 1025 / NCDC KC755 / 5377) [TaxId:400667]
    Gene: aroQ, A1S_2009
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d5yhmi_
  • Chain 'J':
    Compound: 3-dehydroquinate dehydratase
    Species: Acinetobacter baumannii (strain ATCC 17978 / CIP 53.77 / LMG 1025 / NCDC KC755 / 5377) [TaxId:400667]
    Gene: aroQ, A1S_2009
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d5yhmj_
  • Chain 'K':
    Compound: 3-dehydroquinate dehydratase
    Species: Acinetobacter baumannii (strain ATCC 17978 / CIP 53.77 / LMG 1025 / NCDC KC755 / 5377) [TaxId:400667]
    Gene: aroQ, A1S_2009
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d5yhmk_
  • Chain 'L':
    Compound: 3-dehydroquinate dehydratase
    Species: Acinetobacter baumannii (strain ATCC 17978 / CIP 53.77 / LMG 1025 / NCDC KC755 / 5377) [TaxId:400667]
    Gene: aroQ, A1S_2009
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d5yhml_
  • Heterogens: SO4, TRS, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence; same for both SEQRES and ATOM records: (download)
    >5yhmA (A:)
    stilvihgpnlnllgkrepevyghltldninrqliaqaeqasitldtfqsnwegaivdri
    hqaqtegvkliiinpaalthtsvalrdallgvaipfievhlsnvhareafrhhsylsdka
    igvicglgakgysfaldyaiekiqp
    

  • Chain 'B':
    Sequence; same for both SEQRES and ATOM records: (download)
    >5yhmB (B:)
    stilvihgpnlnllgkrepevyghltldninrqliaqaeqasitldtfqsnwegaivdri
    hqaqtegvkliiinpaalthtsvalrdallgvaipfievhlsnvhareafrhhsylsdka
    igvicglgakgysfaldyaiekiqp
    

  • Chain 'C':
    Sequence; same for both SEQRES and ATOM records: (download)
    >5yhmC (C:)
    stilvihgpnlnllgkrepevyghltldninrqliaqaeqasitldtfqsnwegaivdri
    hqaqtegvkliiinpaalthtsvalrdallgvaipfievhlsnvhareafrhhsylsdka
    igvicglgakgysfaldyaiekiqp
    

  • Chain 'D':
    Sequence; same for both SEQRES and ATOM records: (download)
    >5yhmD (D:)
    stilvihgpnlnllgkrepevyghltldninrqliaqaeqasitldtfqsnwegaivdri
    hqaqtegvkliiinpaalthtsvalrdallgvaipfievhlsnvhareafrhhsylsdka
    igvicglgakgysfaldyaiekiqp
    

  • Chain 'E':
    Sequence; same for both SEQRES and ATOM records: (download)
    >5yhmE (E:)
    stilvihgpnlnllgkrepevyghltldninrqliaqaeqasitldtfqsnwegaivdri
    hqaqtegvkliiinpaalthtsvalrdallgvaipfievhlsnvhareafrhhsylsdka
    igvicglgakgysfaldyaiekiqp
    

  • Chain 'F':
    Sequence; same for both SEQRES and ATOM records: (download)
    >5yhmF (F:)
    stilvihgpnlnllgkrepevyghltldninrqliaqaeqasitldtfqsnwegaivdri
    hqaqtegvkliiinpaalthtsvalrdallgvaipfievhlsnvhareafrhhsylsdka
    igvicglgakgysfaldyaiekiqp
    

  • Chain 'G':
    Sequence; same for both SEQRES and ATOM records: (download)
    >5yhmG (G:)
    stilvihgpnlnllgkrepevyghltldninrqliaqaeqasitldtfqsnwegaivdri
    hqaqtegvkliiinpaalthtsvalrdallgvaipfievhlsnvhareafrhhsylsdka
    igvicglgakgysfaldyaiekiqp
    

  • Chain 'H':
    Sequence; same for both SEQRES and ATOM records: (download)
    >5yhmH (H:)
    stilvihgpnlnllgkrepevyghltldninrqliaqaeqasitldtfqsnwegaivdri
    hqaqtegvkliiinpaalthtsvalrdallgvaipfievhlsnvhareafrhhsylsdka
    igvicglgakgysfaldyaiekiqp
    

  • Chain 'I':
    Sequence; same for both SEQRES and ATOM records: (download)
    >5yhmI (I:)
    stilvihgpnlnllgkrepevyghltldninrqliaqaeqasitldtfqsnwegaivdri
    hqaqtegvkliiinpaalthtsvalrdallgvaipfievhlsnvhareafrhhsylsdka
    igvicglgakgysfaldyaiekiqp
    

  • Chain 'J':
    Sequence; same for both SEQRES and ATOM records: (download)
    >5yhmJ (J:)
    stilvihgpnlnllgkrepevyghltldninrqliaqaeqasitldtfqsnwegaivdri
    hqaqtegvkliiinpaalthtsvalrdallgvaipfievhlsnvhareafrhhsylsdka
    igvicglgakgysfaldyaiekiqp
    

  • Chain 'K':
    Sequence; same for both SEQRES and ATOM records: (download)
    >5yhmK (K:)
    msstilvihgpnlnllgkrepevyghltldninrqliaqaeqasitldtfqsnwegaivd
    rihqaqtegvkliiinpaalthtsvalrdallgvaipfievhlsnvhareafrhhsylsd
    kaigvicglgakgysfaldyaiekiqp
    

  • Chain 'L':
    Sequence; same for both SEQRES and ATOM records: (download)
    >5yhmL (L:)
    stilvihgpnlnllgkrepevyghltldninrqliaqaeqasitldtfqsnwegaivdri
    hqaqtegvkliiinpaalthtsvalrdallgvaipfievhlsnvhareafrhhsylsdka
    igvicglgakgysfaldyaiekiqp