PDB entry 5yfk
View 5yfk on RCSB PDB site
Description: X-ray structure of a mutant form C232S of Clostridium perfringens sortase B
Class: transferase
Keywords: cystein transpeptidase, sortase, TRANSFERASE
Deposited on
2017-09-21, released
2017-10-18
The last revision prior to the SCOPe 2.08 freeze date was dated
2017-10-25, with a file datestamp of
2017-10-20.
Experiment type: XRAY
Resolution: 1.8 Å
R-factor: N/A
AEROSPACI score: 0.37
(click here for full SPACI score report)
Chains and heterogens:
- Chain 'A':
Compound: Uncharacterized protein Sortase B
Species: Clostridium perfringens (strain 13 / Type A) [TaxId:195102]
Gene: CPE0513
Database cross-references and differences (RAF-indexed):
- Uniprot Q8XN25 (Start-225)
- engineered mutation (208)
Domains in SCOPe 2.08: d5yfka_ - Heterogens: HOH
PDB Chain Sequences:
- Chain 'A':
Sequence, based on SEQRES records: (download)
>5yfkA (A:)
mkiyqkrleyytdsrdydnlrslsplsdssvnkspeehkqdaeseknlkninpdyrfwik
vegtnidfpvvqgkdndfylhhnfnkeksfsgsifvdsennlnddsnivvyghnmrndtm
faqikhfknenffnankyvtlyregkkstfeifsvyqenakdleseiktkfsnkedyeky
lkeqeskslfkrdgidlnsndriltlitsgydfvnarivvvakeidlehhhhhh
Sequence, based on observed residues (ATOM records): (download)
>5yfkA (A:)
yytdsrdydnlrslsplsspeehkqdaeseknlkninpdyrfwikvegtnidfpvvqgkd
ndfylhhnfnkeksfsgsifvdsennlnddsnivvyghnmrndtmfaqikhfknenffna
nkyvtlyregkkstfeifsvyqenakdleseiktkfsnkedyekylkeqeskslfkrdgi
dlnsndriltlitsgydfvnarivvvakeid