PDB entry 5yc5
View 5yc5 on RCSB PDB site
Description: Crystal structure of human IgG-Fc in complex with aglycan and optimized Fc gamma receptor IIIa
Class: immune system
Keywords: Immunoglobulin G; Fc receptor; Affinity chromatography; Protein glycosylation; Calorimetry; Protein dynamics, IMMUNE SYSTEM
Deposited on
2017-09-06, released
2018-03-21
The last revision prior to the SCOPe 2.08 freeze date was dated
2020-07-29, with a file datestamp of
2020-07-02.
Experiment type: XRAY
Resolution: 2.71 Å
R-factor: N/A
AEROSPACI score: 0.24
(click here for full SPACI score report)
Chains and heterogens:
- Chain 'A':
Compound: Immunoglobulin gamma-1 heavy chain
Species: Homo sapiens [TaxId:9606]
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.08: d5yc5a1, d5yc5a2 - Chain 'B':
Compound: Immunoglobulin gamma-1 heavy chain
Species: Homo sapiens [TaxId:9606]
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.08: d5yc5b1, d5yc5b2 - Chain 'C':
Compound: Low affinity immunoglobulin gamma Fc region receptor III-A
Species: Homo sapiens [TaxId:9606]
Gene: FCGR3A, CD16A, FCG3, FCGR3, IGFR3
Database cross-references and differences (RAF-indexed):
- Uniprot P08637
- engineered mutation (8)
- engineered mutation (10)
- engineered mutation (16)
- engineered mutation (29)
- engineered mutation (56)
- engineered mutation (73)
- engineered mutation (98)
- engineered mutation (102)
- engineered mutation (152)
- variant (157)
Domains in SCOPe 2.08: d5yc5c1, d5yc5c2 - Heterogens: CL, HOH
PDB Chain Sequences:
- Chain 'A':
Sequence, based on SEQRES records: (download)
>5yc5A (A:)
htcppcpapellggpsvflfppkpkdtlmisrtpevtcvvvdvshedpevkfnwyvdgve
vhnaktkpreeqynstyrvvsvltvlhqdwlngkeykckvsnkalpapiektiskakgqp
repqvytlppsrdeltknqvsltclvkgfypsdiavewesngqpennykttppvldsdgs
fflyskltvdksrwqqgnvfscsvmhealhnhytqkslslspg
Sequence, based on observed residues (ATOM records): (download)
>5yc5A (A:)
llggpsvflfppkpkdtlmisrtpevtcvvvdvshedpevkfnwyvdgvevhnaktkpre
eqynstyrvvsvltvlhqdwlngkeykckvsnkalpapiektiskakgqprepqvytlpp
srdeltknqvsltclvkgfypsdiavewesngqpennykttppvldsdgsfflyskltvd
ksrwqqgnvfscsvmhealhnhytqkslsls
- Chain 'B':
Sequence, based on SEQRES records: (download)
>5yc5B (B:)
htcppcpapellggpsvflfppkpkdtlmisrtpevtcvvvdvshedpevkfnwyvdgve
vhnaktkpreeqynstyrvvsvltvlhqdwlngkeykckvsnkalpapiektiskakgqp
repqvytlppsrdeltknqvsltclvkgfypsdiavewesngqpennykttppvldsdgs
fflyskltvdksrwqqgnvfscsvmhealhnhytqkslslspg
Sequence, based on observed residues (ATOM records): (download)
>5yc5B (B:)
pellggpsvflfppkpkdtlmisrtpevtcvvvdvshedpevkfnwyvdgvevhnaktkp
reeqynstyrvvsvltvlhqdwlngkeykckvsnkalpapiektiskakgqprepqvytl
ppsrdeltknqvsltclvkgfypsdiavewesngqpennykttppvldsdgsfflysklt
vdksrwqqgnvfscsvmhealhnhytqkslsls
- Chain 'C':
Sequence, based on SEQRES records: (download)
>5yc5C (C:)
rtedlpkaevilepqwnrvlekdsvtlkcrgayspednstqwfhneslissqassylida
atvddsgeyrcqtslstlsdpvqlevhigwlllqaprwefkegdpihlrchswkntalhk
vtylqngkgrkyfhhnsdfyipkatlkdsgsyscrglvgsknvssetvnititqgghhhh
hh
Sequence, based on observed residues (ATOM records): (download)
>5yc5C (C:)
dlpkaevilepqwnrvlekdsvtlkcrgayspednstqwfhneslissqassylidaatv
ddsgeyrcqtslstlsdpvqlevhigwlllqaprwefkegdpihlrchswkntalhkvty
lqngkgrkyfhhnsdfyipkatlkdsgsyscrglvgsknvssetvnititq