PDB entry 5y8t
View 5y8t on RCSB PDB site
Description: Crystal structure of Bacillus subtilis PadR in complex with p-coumaric acid
Class: transcription
Keywords: Transcription factor, TRANSCRIPTION
Deposited on
2017-08-21, released
2017-11-29
The last revision prior to the SCOPe 2.07 freeze date was dated
2017-11-29, with a file datestamp of
2017-11-24.
Experiment type: XRAY
Resolution: 2 Å
R-factor: N/A
AEROSPACI score: 0.32
(click here for full SPACI score report)
Chains and heterogens:
- Chain 'A':
Compound: Transcriptional regulator
Species: Bacillus subtilis subsp. spizizenii (strain ATCC 23059 / NRRL B-14472 / W23) [TaxId:655816]
Gene: padR, BSUW23_04210
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.07: d5y8ta_ - Chain 'B':
Compound: Transcriptional regulator
Species: Bacillus subtilis subsp. spizizenii (strain ATCC 23059 / NRRL B-14472 / W23) [TaxId:655816]
Gene: padR, BSUW23_04210
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.07: d5y8tb_ - Chain 'C':
Compound: Transcriptional regulator
Species: Bacillus subtilis subsp. spizizenii (strain ATCC 23059 / NRRL B-14472 / W23) [TaxId:655816]
Gene: padR, BSUW23_04210
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.07: d5y8tc_ - Heterogens: HC4, HOH
PDB Chain Sequences:
- Chain 'A':
Sequence, based on SEQRES records: (download)
>5y8tA (A:)
gsakdpmrvlkyailgllrkgelsgyditsyfkeelgqfwsakhsqiypelkkltdegfi
tfrttiqgtklekkmytltdsgkqelhdwlirhqpipetvkdefmlkayfisslsrqeas
dlftdqllkrkaklsdlqgsyeklmasaepmsfsspdfghylvltkalereknyvswles
ilamided
Sequence, based on observed residues (ATOM records): (download)
>5y8tA (A:)
rvlkyailgllrkgelsgyditsyfkeelgqfwsakhsqiypelkkltdegfitytltds
gkqelhdwlirhqpipetvkdefmlkayfisslsrqeasdlftdqllkrkaklsdlqgsy
eklmapmsfsspdfghylvltkalereknyvswlesilamid
- Chain 'B':
Sequence, based on SEQRES records: (download)
>5y8tB (B:)
gsakdpmrvlkyailgllrkgelsgyditsyfkeelgqfwsakhsqiypelkkltdegfi
tfrttiqgtklekkmytltdsgkqelhdwlirhqpipetvkdefmlkayfisslsrqeas
dlftdqllkrkaklsdlqgsyeklmasaepmsfsspdfghylvltkalereknyvswles
ilamided
Sequence, based on observed residues (ATOM records): (download)
>5y8tB (B:)
rvlkyailgllrkgelsgyditsyfkeelgqfwsakhsqiypelkkltdegfitfrtkkm
ytltdsgkqelhdwlirhqpipetvkdefmlkayfisslsrqeasdlftdqllkrkakls
dlqgsyeklmapmsfsspdfghylvltkalereknyvswlesilamide
- Chain 'C':
Sequence, based on SEQRES records: (download)
>5y8tC (C:)
gsakdpmrvlkyailgllrkgelsgyditsyfkeelgqfwsakhsqiypelkkltdegfi
tfrttiqgtklekkmytltdsgkqelhdwlirhqpipetvkdefmlkayfisslsrqeas
dlftdqllkrkaklsdlqgsyeklmasaepmsfsspdfghylvltkalereknyvswles
ilamided
Sequence, based on observed residues (ATOM records): (download)
>5y8tC (C:)
rvlkyailgllrkgelsgyditsyfkeelgqfwsakhsqiypelkkltdegfitfrkmyt
ltdsgkqelhdwlirhqpipetvkdefmlkayfisslsrqeasdlftdqllkrkaklsdl
qgsyeklmapmsfsspdfghylvltkalereknyvswlesilamid