PDB entry 5xvi

View 5xvi on RCSB PDB site
Description: Crystal Structure of Aspergillus niger Apo- Glutamate Dehydrogenase
Class: oxidoreductase
Keywords: Aspergillus, Glutamate, Dehydrogenase, 2-oxoglutarate, Allostery, OXIDOREDUCTASE
Deposited on 2017-06-28, released 2018-03-21
The last revision prior to the SCOPe 2.08 freeze date was dated 2018-05-09, with a file datestamp of 2018-05-04.
Experiment type: XRAY
Resolution: 2.8 Å
R-factor: N/A
AEROSPACI score: 0.16 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: glutamate dehydrogenase
    Species: Aspergillus niger [TaxId:5061]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d5xvia1
  • Chain 'B':
    Compound: glutamate dehydrogenase
    Species: Aspergillus niger [TaxId:5061]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d5xvib1
  • Chain 'C':
    Compound: glutamate dehydrogenase
    Species: Aspergillus niger [TaxId:5061]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d5xvic1
  • Chain 'D':
    Compound: glutamate dehydrogenase
    Species: Aspergillus niger [TaxId:5061]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d5xvid1
  • Chain 'E':
    Compound: glutamate dehydrogenase
    Species: Aspergillus niger [TaxId:5061]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d5xvie1
  • Chain 'F':
    Compound: glutamate dehydrogenase
    Species: Aspergillus niger [TaxId:5061]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d5xvif1
  • Heterogens: GOL, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >5xviA (A:)
msnlphepefeqaykelastlenstlfqknpeyrkalavvsvperviqfrvvweddagnv
qvnrgfrvqfnsalgpykgglrfhpsvnlsilkflgfeqifknaltglnmgggkggsdfd
pkgksdneirrfcvsfmtelckhigadtdvpagdigvtgrevgflfgqyrkirnqwegvl
tgkggswggslirpeatgygvvyyvehmiahatngqesfkgkrvaisgsgnvaqyaalkv
ielggsvvslsdsqgsliingegsftpeeieliaqtkverkqlasivgaapfsdankfky
iagarpwvhvgkvdvalpsatqneisgeeaqvlinagckfiaegsnmgctqeaidtfeah
rtanagaaaiwyapgkaanaggvavsglemaqnsarlswtseevdarlkdimrdcfkngl
etaqeyatpaegvlpslvtgsniagftkvaaamkdqgdww

    Sequence, based on observed residues (ATOM records): (download) 
    >5xviA (A:)
snlphepefeqaykelastlenstlfqknpeyrkalavvsvperviqfrvvweddagnvq
vnrgfrvqfnsalgpykgglrfhpsvnlsilkflgfeqifknaltglnmgggkggsdfdp
kgksdneirrfcvsfmtelckhigadtdvpagdigvtgrevgflfgqyrkirnqwegvlt
gkggswggslirpeatgygvvyyvehmiahatngqesfkgkrvaisgsgnvaqyaalkvi
elggsvvslsdsqgsliingegsftpeeieliaqtkverkqlasivgaapfsdankfkyi
agarpwvhvgkvdvalpsatqneisgeeaqvlinagckfiaegsnmgctqeaidtfeahr
tanagaaaiwyapgkaanaggvavsglemaqnsarlswtseevdarlkdimrdcfkngle
taqeyatpaegvlpslvtgsniagftkvaaamkdqgdww

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >5xviB (B:)
msnlphepefeqaykelastlenstlfqknpeyrkalavvsvperviqfrvvweddagnv
qvnrgfrvqfnsalgpykgglrfhpsvnlsilkflgfeqifknaltglnmgggkggsdfd
pkgksdneirrfcvsfmtelckhigadtdvpagdigvtgrevgflfgqyrkirnqwegvl
tgkggswggslirpeatgygvvyyvehmiahatngqesfkgkrvaisgsgnvaqyaalkv
ielggsvvslsdsqgsliingegsftpeeieliaqtkverkqlasivgaapfsdankfky
iagarpwvhvgkvdvalpsatqneisgeeaqvlinagckfiaegsnmgctqeaidtfeah
rtanagaaaiwyapgkaanaggvavsglemaqnsarlswtseevdarlkdimrdcfkngl
etaqeyatpaegvlpslvtgsniagftkvaaamkdqgdww

    Sequence, based on observed residues (ATOM records): (download) 
    >5xviB (B:)
snlphepefeqaykelastlenstlfqknpeyrkalavvsvperviqfrvvweddagnvq
vnrgfrvqfnsalgpykgglrfhpsvnlsilkflgfeqifknaltglnmgggkggsdfdp
kgksdneirrfcvsfmtelckhigadtdvpagdigvtgrevgflfgqyrkirnqwegvlt
gkggswggslirpeatgygvvyyvehmiahatngqesfkgkrvaisgsgnvaqyaalkvi
elggsvvslsdsqgsliingegsftpeeieliaqtkverkqlasivgaapfsdankfkyi
agarpwvhvgkvdvalpsatqneisgeeaqvlinagckfiaegsnmgctqeaidtfeahr
tanagaaaiwyapgkaanaggvavsglemaqnsarlswtseevdarlkdimrdcfkngle
taqeyatpaegvlpslvtgsniagftkvaaamkdqgdww

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >5xviC (C:)
msnlphepefeqaykelastlenstlfqknpeyrkalavvsvperviqfrvvweddagnv
qvnrgfrvqfnsalgpykgglrfhpsvnlsilkflgfeqifknaltglnmgggkggsdfd
pkgksdneirrfcvsfmtelckhigadtdvpagdigvtgrevgflfgqyrkirnqwegvl
tgkggswggslirpeatgygvvyyvehmiahatngqesfkgkrvaisgsgnvaqyaalkv
ielggsvvslsdsqgsliingegsftpeeieliaqtkverkqlasivgaapfsdankfky
iagarpwvhvgkvdvalpsatqneisgeeaqvlinagckfiaegsnmgctqeaidtfeah
rtanagaaaiwyapgkaanaggvavsglemaqnsarlswtseevdarlkdimrdcfkngl
etaqeyatpaegvlpslvtgsniagftkvaaamkdqgdww

    Sequence, based on observed residues (ATOM records): (download) 
    >5xviC (C:)
snlphepefeqaykelastlenstlfqknpeyrkalavvsvperviqfrvvweddagnvq
vnrgfrvqfnsalgpykgglrfhpsvnlsilkflgfeqifknaltglnmgggkggsdfdp
kgksdneirrfcvsfmtelckhigadtdvpagdigvtgrevgflfgqyrkirnqwegvlt
gkggswggslirpeatgygvvyyvehmiahatngqesfkgkrvaisgsgnvaqyaalkvi
elggsvvslsdsqgsliingegsftpeeieliaqtkverkqlasivgaapfsdankfkyi
agarpwvhvgkvdvalpsatqneisgeeaqvlinagckfiaegsnmgctqeaidtfeahr
tanagaaaiwyapgkaanaggvavsglemaqnsarlswtseevdarlkdimrdcfkngle
taqeyatpaegvlpslvtgsniagftkvaaamkdqgdww

  • Chain 'D':
    Sequence, based on SEQRES records: (download) 
    >5xviD (D:)
msnlphepefeqaykelastlenstlfqknpeyrkalavvsvperviqfrvvweddagnv
qvnrgfrvqfnsalgpykgglrfhpsvnlsilkflgfeqifknaltglnmgggkggsdfd
pkgksdneirrfcvsfmtelckhigadtdvpagdigvtgrevgflfgqyrkirnqwegvl
tgkggswggslirpeatgygvvyyvehmiahatngqesfkgkrvaisgsgnvaqyaalkv
ielggsvvslsdsqgsliingegsftpeeieliaqtkverkqlasivgaapfsdankfky
iagarpwvhvgkvdvalpsatqneisgeeaqvlinagckfiaegsnmgctqeaidtfeah
rtanagaaaiwyapgkaanaggvavsglemaqnsarlswtseevdarlkdimrdcfkngl
etaqeyatpaegvlpslvtgsniagftkvaaamkdqgdww

    Sequence, based on observed residues (ATOM records): (download) 
    >5xviD (D:)
nlphepefeqaykelastlenstlfqknpeyrkalavvsvperviqfrvvweddagnvqv
nrgfrvqfnsalgpykgglrfhpsvnlsilkflgfeqifknaltglnmgggkggsdfdpk
gksdneirrfcvsfmtelckhigadtdvpagdigvtgrevgflfgqyrkirnqwegvltg
kggswggslirpeatgygvvyyvehmiahatngqesfkgkrvaisgsgnvaqyaalkvie
lggsvvslsdsqgsliingegsftpeeieliaqtkverkqlasivgaapfsdankfkyia
garpwvhvgkvdvalpsatqneisgeeaqvlinagckfiaegsnmgctqeaidtfeahrt
anagaaaiwyapgkaanaggvavsglemaqnsarlswtseevdarlkdimrdcfknglet
aqeyatpaegvlpslvtgsniagftkvaaamkdqgdww

  • Chain 'E':
    Sequence, based on SEQRES records: (download) 
    >5xviE (E:)
msnlphepefeqaykelastlenstlfqknpeyrkalavvsvperviqfrvvweddagnv
qvnrgfrvqfnsalgpykgglrfhpsvnlsilkflgfeqifknaltglnmgggkggsdfd
pkgksdneirrfcvsfmtelckhigadtdvpagdigvtgrevgflfgqyrkirnqwegvl
tgkggswggslirpeatgygvvyyvehmiahatngqesfkgkrvaisgsgnvaqyaalkv
ielggsvvslsdsqgsliingegsftpeeieliaqtkverkqlasivgaapfsdankfky
iagarpwvhvgkvdvalpsatqneisgeeaqvlinagckfiaegsnmgctqeaidtfeah
rtanagaaaiwyapgkaanaggvavsglemaqnsarlswtseevdarlkdimrdcfkngl
etaqeyatpaegvlpslvtgsniagftkvaaamkdqgdww

    Sequence, based on observed residues (ATOM records): (download) 
    >5xviE (E:)
nlphepefeqaykelastlenstlfqknpeyrkalavvsvperviqfrvvweddagnvqv
nrgfrvqfnsalgpykgglrfhpsvnlsilkflgfeqifknaltglnmgggkggsdfdpk
gksdneirrfcvsfmtelckhigadtdvpagdigvtgrevgflfgqyrkirnqwegvltg
kggswggslirpeatgygvvyyvehmiahatngqesfkgkrvaisgsgnvaqyaalkvie
lggsvvslsdsqgsliingegsftpeeieliaqtkverkqlasivgaapfsdankfkyia
garpwvhvgkvdvalpsatqneisgeeaqvlinagckfiaegsnmgctqeaidtfeahrt
anagaaaiwyapgkaanaggvavsglemaqnsarlswtseevdarlkdimrdcfknglet
aqeyatpaegvlpslvtgsniagftkvaaamkdqgdww

  • Chain 'F':
    Sequence, based on SEQRES records: (download) 
    >5xviF (F:)
msnlphepefeqaykelastlenstlfqknpeyrkalavvsvperviqfrvvweddagnv
qvnrgfrvqfnsalgpykgglrfhpsvnlsilkflgfeqifknaltglnmgggkggsdfd
pkgksdneirrfcvsfmtelckhigadtdvpagdigvtgrevgflfgqyrkirnqwegvl
tgkggswggslirpeatgygvvyyvehmiahatngqesfkgkrvaisgsgnvaqyaalkv
ielggsvvslsdsqgsliingegsftpeeieliaqtkverkqlasivgaapfsdankfky
iagarpwvhvgkvdvalpsatqneisgeeaqvlinagckfiaegsnmgctqeaidtfeah
rtanagaaaiwyapgkaanaggvavsglemaqnsarlswtseevdarlkdimrdcfkngl
etaqeyatpaegvlpslvtgsniagftkvaaamkdqgdww

    Sequence, based on observed residues (ATOM records): (download) 
    >5xviF (F:)
nlphepefeqaykelastlenstlfqknpeyrkalavvsvperviqfrvvweddagnvqv
nrgfrvqfnsalgpykgglrfhpsvnlsilkflgfeqifknaltglnmgggkggsdfdpk
gksdneirrfcvsfmtelckhigadtdvpagdigvtgrevgflfgqyrkirnqwegvltg
kggswggslirpeatgygvvyyvehmiahatngqesfkgkrvaisgsgnvaqyaalkvie
lggsvvslsdsqgsliingegsftpeeieliaqtkverkqlasivgaapfsdankfkyia
garpwvhvgkvdvalpsatqneisgeeaqvlinagckfiaegsnmgctqeaidtfeahrt
anagaaaiwyapgkaanaggvavsglemaqnsarlswtseevdarlkdimrdcfknglet
aqeyatpaegvlpslvtgsniagftkvaaamkdqgdww