PDB entry 5xrt

View 5xrt on RCSB PDB site
Description: Crystal structure of A/Minnesota/11/2010 (H3N2) influenza virus hemagglutinin
Class: viral protein
Keywords: influenza virus, hemagglutinin, receptor binding, antigen protein, VIRAL PROTEIN
Deposited on 2017-06-09, released 2018-07-25
The last revision prior to the SCOPe 2.07 freeze date was dated 2018-07-25, with a file datestamp of 2018-07-20.
Experiment type: XRAY
Resolution: 3.15 Å
R-factor: N/A
AEROSPACI score: 0.12 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Hemagglutinin
    Species: Influenza A virus (A/swine/Minnesota/A01134337/2010(H3N2)) [TaxId:1159784]
    Gene: HA
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d5xrta_
  • Chain 'B':
    Compound: Hemagglutinin
    Species: Influenza A virus [TaxId:1341145]
    Gene: HA
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d5xrtb_
  • Chain 'C':
    Compound: Hemagglutinin
    Species: Influenza A virus (A/swine/Minnesota/A01134337/2010(H3N2)) [TaxId:1159784]
    Gene: HA
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d5xrtc_
  • Chain 'D':
    Compound: Hemagglutinin
    Species: Influenza A virus [TaxId:1341145]
    Gene: HA
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d5xrtd_
  • Chain 'E':
    Compound: Hemagglutinin
    Species: Influenza A virus (A/swine/Minnesota/A01134337/2010(H3N2)) [TaxId:1159784]
    Gene: HA
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d5xrte_
  • Chain 'F':
    Compound: Hemagglutinin
    Species: Influenza A virus [TaxId:1341145]
    Gene: HA
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d5xrtf_
  • Chain 'G':
    Compound: Hemagglutinin
    Species: Influenza A virus (A/swine/Minnesota/A01134337/2010(H3N2)) [TaxId:1159784]
    Gene: HA
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d5xrtg_
  • Chain 'H':
    Compound: Hemagglutinin
    Species: Influenza A virus [TaxId:1341145]
    Gene: HA
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d5xrth_
  • Heterogens: NAG, FUC, FUL, BMA, MAN, CAC

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >5xrtA (A:)
qklpgsdnsmatlclghhavpngtlvktitddqievtnatelvqssstgricnsphqild
gknctlidallgdphcddfqnkewdlfverstaysncypyyvpdyatlrslvassgnlef
tqesfnwtgvaqdgssyacrrgsvnsffsrlnwlynlnykypeqnvtmpnndkfdklyiw
gvhhpgtdkdqtnlyvqasgrvivstkrsqqtvipnigsrpwvrgvssiisiywtivkpg
dillinstgnliaprgyfkiqsgkssimrsdahidecnsecitpngsipndkpfqnvnki
tygacpryvkqntlklatgmrnvpekqtr

    Sequence, based on observed residues (ATOM records): (download) 
    >5xrtA (A:)
nsmatlclghhavpngtlvktitddqievtnatelvqssstgricnsphqildgknctli
dallgdphcddfqnkewdlfverstaysncypyyvpdyatlrslvassgnleftqesfnw
tgvaqdgssyacrrgsvnsffsrlnwlynlnykypeqnvtmpnndkfdklyiwgvhhpgt
dkdqtnlyvqasgrvivstkrsqqtvipnigsrpwvrgvssiisiywtivkpgdillins
tgnliaprgyfkiqsgkssimrsdahidecnsecitpngsipndkpfqnvnkitygacpr
yvkqntlklatgmrnvpek

  • Chain 'B':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >5xrtB (B:)
gifgaiagfiengwegmvdgwygfrhqnsegtgqaadlkstqaainqitgklnrvikktn
ekfhqiekefsevegriqdlekyvedtkidlwsynaellvalenqhtidltdsemsklfe
rtrrqlrenaedmgngcfkiyhkcdnacigsirngtydhdiyrnealnnrfqik

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >5xrtC (C:)
qklpgsdnsmatlclghhavpngtlvktitddqievtnatelvqssstgricnsphqild
gknctlidallgdphcddfqnkewdlfverstaysncypyyvpdyatlrslvassgnlef
tqesfnwtgvaqdgssyacrrgsvnsffsrlnwlynlnykypeqnvtmpnndkfdklyiw
gvhhpgtdkdqtnlyvqasgrvivstkrsqqtvipnigsrpwvrgvssiisiywtivkpg
dillinstgnliaprgyfkiqsgkssimrsdahidecnsecitpngsipndkpfqnvnki
tygacpryvkqntlklatgmrnvpekqtr

    Sequence, based on observed residues (ATOM records): (download) 
    >5xrtC (C:)
nsmatlclghhavpngtlvktitddqievtnatelvqssstgricnsphqildgknctli
dallgdphcddfqnkewdlfverstaysncypyyvpdyatlrslvassgnleftqesfnw
tgvaqdgssyacrrgsvnsffsrlnwlynlnykypeqnvtmpnndkfdklyiwgvhhpgt
dkdqtnlyvqasgrvivstkrsqqtvipnigsrpwvrgvssiisiywtivkpgdillins
tgnliaprgyfkiqsgkssimrsdahidecnsecitpngsipndkpfqnvnkitygacpr
yvkqntlklatgmrnvpek

  • Chain 'D':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >5xrtD (D:)
gifgaiagfiengwegmvdgwygfrhqnsegtgqaadlkstqaainqitgklnrvikktn
ekfhqiekefsevegriqdlekyvedtkidlwsynaellvalenqhtidltdsemsklfe
rtrrqlrenaedmgngcfkiyhkcdnacigsirngtydhdiyrnealnnrfqik

  • Chain 'E':
    Sequence, based on SEQRES records: (download) 
    >5xrtE (E:)
qklpgsdnsmatlclghhavpngtlvktitddqievtnatelvqssstgricnsphqild
gknctlidallgdphcddfqnkewdlfverstaysncypyyvpdyatlrslvassgnlef
tqesfnwtgvaqdgssyacrrgsvnsffsrlnwlynlnykypeqnvtmpnndkfdklyiw
gvhhpgtdkdqtnlyvqasgrvivstkrsqqtvipnigsrpwvrgvssiisiywtivkpg
dillinstgnliaprgyfkiqsgkssimrsdahidecnsecitpngsipndkpfqnvnki
tygacpryvkqntlklatgmrnvpekqtr

    Sequence, based on observed residues (ATOM records): (download) 
    >5xrtE (E:)
nsmatlclghhavpngtlvktitddqievtnatelvqssstgricnsphqildgknctli
dallgdphcddfqnkewdlfverstaysncypyyvpdyatlrslvassgnleftqesfnw
tgvaqdgssyacrrgsvnsffsrlnwlynlnykypeqnvtmpnndkfdklyiwgvhhpgt
dkdqtnlyvqasgrvivstkrsqqtvipnigsrpwvrgvssiisiywtivkpgdillins
tgnliaprgyfkiqsgkssimrsdahidecnsecitpngsipndkpfqnvnkitygacpr
yvkqntlklatgmrnvpek

  • Chain 'F':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >5xrtF (F:)
gifgaiagfiengwegmvdgwygfrhqnsegtgqaadlkstqaainqitgklnrvikktn
ekfhqiekefsevegriqdlekyvedtkidlwsynaellvalenqhtidltdsemsklfe
rtrrqlrenaedmgngcfkiyhkcdnacigsirngtydhdiyrnealnnrfqik

  • Chain 'G':
    Sequence, based on SEQRES records: (download) 
    >5xrtG (G:)
qklpgsdnsmatlclghhavpngtlvktitddqievtnatelvqssstgricnsphqild
gknctlidallgdphcddfqnkewdlfverstaysncypyyvpdyatlrslvassgnlef
tqesfnwtgvaqdgssyacrrgsvnsffsrlnwlynlnykypeqnvtmpnndkfdklyiw
gvhhpgtdkdqtnlyvqasgrvivstkrsqqtvipnigsrpwvrgvssiisiywtivkpg
dillinstgnliaprgyfkiqsgkssimrsdahidecnsecitpngsipndkpfqnvnki
tygacpryvkqntlklatgmrnvpekqtr

    Sequence, based on observed residues (ATOM records): (download) 
    >5xrtG (G:)
nsmatlclghhavpngtlvktitddqievtnatelvqssstgricnsphqildgknctli
dallgdphcddfqnkewdlfverstaysncypyyvpdyatlrslvassgnleftqesfnw
tgvaqdgssyacrrgsvnsffsrlnwlynlnykypeqnvtmpnndkfdklyiwgvhhpgt
dkdqtnlyvqasgrvivstkrsqqtvipnigsrpwvrgvssiisiywtivkpgdillins
tgnliaprgyfkiqsgkssimrsdahidecnsecitpngsipndkpfqnvnkitygacpr
yvkqntlklatgmrnvpek

  • Chain 'H':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >5xrtH (H:)
gifgaiagfiengwegmvdgwygfrhqnsegtgqaadlkstqaainqitgklnrvikktn
ekfhqiekefsevegriqdlekyvedtkidlwsynaellvalenqhtidltdsemsklfe
rtrrqlrenaedmgngcfkiyhkcdnacigsirngtydhdiyrnealnnrfqik