PDB entry 5xm3

View 5xm3 on RCSB PDB site
Description: Crystal Structure of Methanol dehydrogenase from Methylophaga aminisulfidivorans
Class: isomerase
Keywords: marine, methanol dehydrogenase, methylophaga, pyrroloquinoline quinone, Mg++, ISOMERASE
Deposited on 2017-05-12, released 2018-03-21
The last revision prior to the SCOPe 2.07 freeze date was dated 2018-03-21, with a file datestamp of 2018-03-16.
Experiment type: XRAY
Resolution: 1.7 Å
R-factor: N/A
AEROSPACI score: 0.4 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: glucose dehydrogenase
    Species: Methylophaga aminisulfidivorans MP [TaxId:1026882]
    Gene: MAMP_01209
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d5xm3a_
  • Chain 'B':
    Compound: Methanol dehydrogenase [cytochrome c] subunit 2
    Species: Methylophaga aminisulfidivorans MP [TaxId:1026882]
    Gene: MAMP_01202
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d5xm3b_
  • Chain 'C':
    Compound: glucose dehydrogenase
    Species: Methylophaga aminisulfidivorans MP [TaxId:1026882]
    Gene: MAMP_01209
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d5xm3c_
  • Chain 'D':
    Compound: Methanol dehydrogenase [cytochrome c] subunit 2
    Species: Methylophaga aminisulfidivorans MP [TaxId:1026882]
    Gene: MAMP_01202
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d5xm3d_
  • Heterogens: PQQ, MG, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >5xm3A (A:)
mremhhsrwskigtalavssalglmsgmsvandklvelsksnenwvmqgkdfsgthysta
kqinkdnvkklrpswsfstgvlnghegaplvvngtmyihtpfpnntfaidldepgvikwe
hkpkqdpaaravaccdvvnrglaywpgddkapamivkslldghvvalnaetgeeywkven
gdisvgqtetaapfvakdlviqgssgaelgvrgyvtaydihtgemvwrwyatgpdadvgl
dkdfnkhnphygqkglgtstwednawkigggtnwgwyaydpqldmfyygsgnpapwnetm
rpgdnkwtmtiwgrdletglakfgyqktphdewdyagvnvmmlseqkdkngkmrkllthp
drngiiytldretgdlvsankmddtanwvkkvdletglpirdpeygtrmghrsrdvcpsa
mgfhnqgfdsydpkrelfylginhlcmdwepfmlpyragqffvganvwtypgpkgdrqng
igsgqvkaynaitgefawekmekfsvwggttategglvfygtldgfikardadtgkllwk
fklpsgvighpmtythkgtqyvainygvggwpavglvfdlndpsaglgavgafkelaknt
qmgggvmvfsldgkspyddvslgeygm

    Sequence, based on observed residues (ATOM records): (download) 
    >5xm3A (A:)
ndklvelsksnenwvmqgkdfsgthystakqinkdnvkklrpswsfstgvlnghegaplv
vngtmyihtpfpnntfaidldepgvikwehkpkqdpaaravaccdvvnrglaywpgddka
pamivkslldghvvalnaetgeeywkvengdisvgqtetaapfvakdlviqgssgaelgv
rgyvtaydihtgemvwrwyatgpdadvgldkdfnkhnphygqkglgtstwednawkiggg
tnwgwyaydpqldmfyygsgnpapwnetmrpgdnkwtmtiwgrdletglakfgyqktphd
ewdyagvnvmmlseqkdkngkmrkllthpdrngiiytldretgdlvsankmddtanwvkk
vdletglpirdpeygtrmghrsrdvcpsamgfhnqgfdsydpkrelfylginhlcmdwep
fmlpyragqffvganvwtypgpkgdrqngigsgqvkaynaitgefawekmekfsvwggtt
ategglvfygtldgfikardadtgkllwkfklpsgvighpmtythkgtqyvainygvggw
pavglvfdlndpsaglgavgafkelakntqmgggvmvfsldgkspyddvslgeygm

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >5xm3B (B:)
mklktiavacsalmmlsgasavmaydgtkckaagdcweakpgfpdkikgskydpkhseke
lnkqdaalkamekrnaerveqfkktgkwvy

    Sequence, based on observed residues (ATOM records): (download) 
    >5xm3B (B:)
ydgtkckaagdcweakpgfpdkikgskydpkhsekelnkqdaalkamekrnaerveqfkk
tgkwvy

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >5xm3C (C:)
mremhhsrwskigtalavssalglmsgmsvandklvelsksnenwvmqgkdfsgthysta
kqinkdnvkklrpswsfstgvlnghegaplvvngtmyihtpfpnntfaidldepgvikwe
hkpkqdpaaravaccdvvnrglaywpgddkapamivkslldghvvalnaetgeeywkven
gdisvgqtetaapfvakdlviqgssgaelgvrgyvtaydihtgemvwrwyatgpdadvgl
dkdfnkhnphygqkglgtstwednawkigggtnwgwyaydpqldmfyygsgnpapwnetm
rpgdnkwtmtiwgrdletglakfgyqktphdewdyagvnvmmlseqkdkngkmrkllthp
drngiiytldretgdlvsankmddtanwvkkvdletglpirdpeygtrmghrsrdvcpsa
mgfhnqgfdsydpkrelfylginhlcmdwepfmlpyragqffvganvwtypgpkgdrqng
igsgqvkaynaitgefawekmekfsvwggttategglvfygtldgfikardadtgkllwk
fklpsgvighpmtythkgtqyvainygvggwpavglvfdlndpsaglgavgafkelaknt
qmgggvmvfsldgkspyddvslgeygm

    Sequence, based on observed residues (ATOM records): (download) 
    >5xm3C (C:)
ndklvelsksnenwvmqgkdfsgthystakqinkdnvkklrpswsfstgvlnghegaplv
vngtmyihtpfpnntfaidldepgvikwehkpkqdpaaravaccdvvnrglaywpgddka
pamivkslldghvvalnaetgeeywkvengdisvgqtetaapfvakdlviqgssgaelgv
rgyvtaydihtgemvwrwyatgpdadvgldkdfnkhnphygqkglgtstwednawkiggg
tnwgwyaydpqldmfyygsgnpapwnetmrpgdnkwtmtiwgrdletglakfgyqktphd
ewdyagvnvmmlseqkdkngkmrkllthpdrngiiytldretgdlvsankmddtanwvkk
vdletglpirdpeygtrmghrsrdvcpsamgfhnqgfdsydpkrelfylginhlcmdwep
fmlpyragqffvganvwtypgpkgdrqngigsgqvkaynaitgefawekmekfsvwggtt
ategglvfygtldgfikardadtgkllwkfklpsgvighpmtythkgtqyvainygvggw
pavglvfdlndpsaglgavgafkelakntqmgggvmvfsldgkspyddvslgeygm

  • Chain 'D':
    Sequence, based on SEQRES records: (download) 
    >5xm3D (D:)
mklktiavacsalmmlsgasavmaydgtkckaagdcweakpgfpdkikgskydpkhseke
lnkqdaalkamekrnaerveqfkktgkwvy

    Sequence, based on observed residues (ATOM records): (download) 
    >5xm3D (D:)
ydgtkckaagdcweakpgfpdkikgskydpkhsekelnkqdaalkamekrnaerveqfkk
tgkwvy