PDB entry 5xlh

View 5xlh on RCSB PDB site
Description: Crystal structure of aerobically purified and aerobically crystallized for 12weeks D. vulgaris Miyazaki F [NiFe]-hydrogenase
Class: oxidoreductase
Keywords: [NiFe]-hydrogenase D. vulgaris, OXIDOREDUCTASE
Deposited on 2017-05-10, released 2018-06-06
The last revision prior to the SCOPe 2.08 freeze date was dated 2018-06-06, with a file datestamp of 2018-06-01.
Experiment type: XRAY
Resolution: 1.93 Å
R-factor: N/A
AEROSPACI score: 0.33 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'L':
    Compound: Periplasmic [NiFe] hydrogenase Large subunit
    Species: Desulfovibrio vulgaris (strain Miyazaki F / DSM 19637) [TaxId:883]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d5xlhl_
  • Chain 'S':
    Compound: Periplasmic [NiFe] hydrogenase Small subunit
    Species: Desulfovibrio vulgaris (strain Miyazaki F / DSM 19637) [TaxId:883]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d5xlhs_
  • Heterogens: SF4, F3S, MPD, NFV, MG, HOH

PDB Chain Sequences:

  • Chain 'L':
    Sequence, based on SEQRES records: (download)
    >5xlhL (L:)
    msgcraqnapggipvtpkssysgpivvdpvtrieghlrievevengkvknayssstlfrg
    leiilkgrdprdaqhftqrtcgvctythalastrcvdnavgvhipknatyirnlvlgaqy
    lhdhivhfyhlhaldfvdvtaalkadpakaakvassisprkttaadlkavqdklktfves
    gqlgpftnayflgghpayyldpetnliatahylealrlqvkaaramavfgaknphtqftv
    vggvtcydaltpqriaefealwketkafvdevyipdllvvaaaykdwtqyggtdnfitfg
    efpkdeydlnsrffkpgvvfkrdfknikpfdkmqieehvrhswyegaearhpwkgqtqpk
    ytdlhgddryswmkaprymgepmetgplaqvliaysqghpkvkavtdavlaklgvgpeal
    fstlgrtaargietaviaeyvgvmlqeykdniakgdnvicapwempkqaegvgfvnaprg
    glshwiriedgkignfqlvvpstwtlgprcdknklspveasligtpvadakrpveilrtv
    hsfdpciacgvh
    

    Sequence, based on observed residues (ATOM records): (download)
    >5xlhL (L:)
    sysgpivvdpvtrieghlrievevengkvknayssstlfrgleiilkgrdprdaqhftqr
    tcgvctythalastrcvdnavgvhipknatyirnlvlgaqylhdhivhfyhlhaldfvdv
    taalkadpakaakvassisprkttaadlkavqdklktfvesgqlgpftnayflgghpayy
    ldpetnliatahylealrlqvkaaramavfgaknphtqftvvggvtcydaltpqriaefe
    alwketkafvdevyipdllvvaaaykdwtqyggtdnfitfgefpkdeydlnsrffkpgvv
    fkrdfknikpfdkmqieehvrhswyegaearhpwkgqtqpkytdlhgddryswmkaprym
    gepmetgplaqvliaysqghpkvkavtdavlaklgvgpealfstlgrtaargietaviae
    yvgvmlqeykdniakgdnvicapwempkqaegvgfvnaprgglshwiriedgkignfqlv
    vpstwtlgprcdknklspveasligtpvadakrpveilrtvhsfdpciacgvh
    

  • Chain 'S':
    Sequence, based on SEQRES records: (download)
    >5xlhS (S:)
    lmgprrpsvvylhnaectgcsesvlrafepyidtlildtlsldyhetimaaagdaaeaal
    eqavnsphgfiavveggiptaangiygkvanhtmldicsrilpkaqaviaygtcatfggv
    qaakpnptgakgvndalkhlgvkainiagcppnpynlvgtivyylknkaapeldslnrpt
    mffgqtvheqcprlphfdagefapsfeseearkgwclyelgckgpvtmnncpkikfnqtn
    wpvdaghpcigcsepdfwdamtpfyqn
    

    Sequence, based on observed residues (ATOM records): (download)
    >5xlhS (S:)
    prrpsvvylhnaectgcsesvlrafepyidtlildtlsldyhetimaaagdaaeaaleqa
    vnsphgfiavveggiptaangiygkvanhtmldicsrilpkaqaviaygtcatfggvqaa
    kpnptgakgvndalkhlgvkainiagcppnpynlvgtivyylknkaapeldslnrptmff
    gqtvheqcprlphfdagefapsfeseearkgwclyelgckgpvtmnncpkikfnqtnwpv
    daghpcigcsepdfwdamtpfyqn