PDB entry 5xlf

View 5xlf on RCSB PDB site
Description: Crystal structure of aerobically purified and aerobically crystallized D. vulgaris Miyazaki F [NiFe]-hydrogenase
Class: oxidoreductase
Keywords: [NiFe]-hydrogenase D. vulgaris, OXIDOREDUCTASE
Deposited on 2017-05-10, released 2018-06-06
The last revision prior to the SCOPe 2.08 freeze date was dated 2018-06-06, with a file datestamp of 2018-06-01.
Experiment type: XRAY
Resolution: 1.71 Å
R-factor: N/A
AEROSPACI score: 0.4 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'L':
    Compound: Periplasmic [NiFe] hydrogenase Large subunit
    Species: Desulfovibrio vulgaris (strain Miyazaki F / DSM 19637) [TaxId:883]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d5xlfl_
  • Chain 'S':
    Compound: Periplasmic [NiFe] hydrogenase Small subunit
    Species: Desulfovibrio vulgaris (strain Miyazaki F / DSM 19637) [TaxId:883]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d5xlfs_
  • Heterogens: SF4, F3S, MPD, NFV, MG, HOH

PDB Chain Sequences:

  • Chain 'L':
    Sequence, based on SEQRES records: (download) 
    >5xlfL (L:)
msgcraqnapggipvtpkssysgpivvdpvtrieghlrievevengkvknayssstlfrg
leiilkgrdprdaqhftqrtcgvctythalastrcvdnavgvhipknatyirnlvlgaqy
lhdhivhfyhlhaldfvdvtaalkadpakaakvassisprkttaadlkavqdklktfves
gqlgpftnayflgghpayyldpetnliatahylealrlqvkaaramavfgaknphtqftv
vggvtcydaltpqriaefealwketkafvdevyipdllvvaaaykdwtqyggtdnfitfg
efpkdeydlnsrffkpgvvfkrdfknikpfdkmqieehvrhswyegaearhpwkgqtqpk
ytdlhgddryswmkaprymgepmetgplaqvliaysqghpkvkavtdavlaklgvgpeal
fstlgrtaargietaviaeyvgvmlqeykdniakgdnvicapwempkqaegvgfvnaprg
glshwiriedgkignfqlvvpstwtlgprcdknklspveasligtpvadakrpveilrtv
hsfdpciacgvh

    Sequence, based on observed residues (ATOM records): (download) 
    >5xlfL (L:)
sysgpivvdpvtrieghlrievevengkvknayssstlfrgleiilkgrdprdaqhftqr
tcgvctythalastrcvdnavgvhipknatyirnlvlgaqylhdhivhfyhlhaldfvdv
taalkadpakaakvassisprkttaadlkavqdklktfvesgqlgpftnayflgghpayy
ldpetnliatahylealrlqvkaaramavfgaknphtqftvvggvtcydaltpqriaefe
alwketkafvdevyipdllvvaaaykdwtqyggtdnfitfgefpkdeydlnsrffkpgvv
fkrdfknikpfdkmqieehvrhswyegaearhpwkgqtqpkytdlhgddryswmkaprym
gepmetgplaqvliaysqghpkvkavtdavlaklgvgpealfstlgrtaargietaviae
yvgvmlqeykdniakgdnvicapwempkqaegvgfvnaprgglshwiriedgkignfqlv
vpstwtlgprcdknklspveasligtpvadakrpveilrtvhsfdpciacgvh

  • Chain 'S':
    Sequence, based on SEQRES records: (download) 
    >5xlfS (S:)
lmgprrpsvvylhnaectgcsesvlrafepyidtlildtlsldyhetimaaagdaaeaal
eqavnsphgfiavveggiptaangiygkvanhtmldicsrilpkaqaviaygtcatfggv
qaakpnptgakgvndalkhlgvkainiagcppnpynlvgtivyylknkaapeldslnrpt
mffgqtvheqcprlphfdagefapsfeseearkgwclyelgckgpvtmnncpkikfnqtn
wpvdaghpcigcsepdfwdamtpfyqn

    Sequence, based on observed residues (ATOM records): (download) 
    >5xlfS (S:)
prrpsvvylhnaectgcsesvlrafepyidtlildtlsldyhetimaaagdaaeaaleqa
vnsphgfiavveggiptaangiygkvanhtmldicsrilpkaqaviaygtcatfggvqaa
kpnptgakgvndalkhlgvkainiagcppnpynlvgtivyylknkaapeldslnrptmff
gqtvheqcprlphfdagefapsfeseearkgwclyelgckgpvtmnncpkikfnqtnwpv
daghpcigcsepdfwdamtpfyqn