PDB entry 5xit

View 5xit on RCSB PDB site
Description: Crystal structure of RNF168 UDM1 in complex with Lys63-linked diubiquitin, form II
Class: transferase/ribosomal protein
Keywords: protein complex, DNA repair, TRANSFERASE-RIBOSOMAL PROTEIN complex
Deposited on 2017-04-27, released 2018-03-07
The last revision prior to the SCOPe 2.08 freeze date was dated 2018-03-28, with a file datestamp of 2018-03-23.
Experiment type: XRAY
Resolution: 2.25 Å
R-factor: N/A
AEROSPACI score: 0.27 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: E3 ubiquitin-protein ligase RNF168
    Species: Homo sapiens [TaxId:9606]
    Gene: RNF168
    Database cross-references and differences (RAF-indexed):
  • Chain 'B':
    Compound: Ubiquitin-40S ribosomal protein S27a
    Species: Mus musculus [TaxId:10090]
    Gene: Rps27a, Uba80, Ubcep1
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d5xitb_
  • Chain 'D':
    Compound: Ubiquitin-40S ribosomal protein S27a
    Species: Mus musculus [TaxId:10090]
    Gene: Rps27a, Uba80, Ubcep1
    Database cross-references and differences (RAF-indexed):
    • Uniprot P62983 (0-75)
      • engineered mutation (62)
    Domains in SCOPe 2.08: d5xitd_
  • Chain 'E':
    Compound: E3 ubiquitin-protein ligase RNF168
    Species: Homo sapiens [TaxId:9606]
    Gene: RNF168
    Database cross-references and differences (RAF-indexed):
  • Chain 'F':
    Compound: Ubiquitin-40S ribosomal protein S27a
    Species: Mus musculus [TaxId:10090]
    Gene: Rps27a, Uba80, Ubcep1
    Database cross-references and differences (RAF-indexed):
    • Uniprot P62983 (0-75)
      • engineered mutation (62)
    Domains in SCOPe 2.08: d5xitf_
  • Chain 'H':
    Compound: Ubiquitin-40S ribosomal protein S27a
    Species: Mus musculus [TaxId:10090]
    Gene: Rps27a, Uba80, Ubcep1
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d5xith_
  • Heterogens: GOL, PR, HOH

PDB Chain Sequences:

  • Chain 'A':
    No sequence available.

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >5xitB (B:)
mqifvktltgktitlevepsdtienvkakiqdkegippdqqrlifagkqledgrtlsdyn
iqkestlhlvlrlrggd

    Sequence, based on observed residues (ATOM records): (download) 
    >5xitB (B:)
mqifvktltgktitlevepsdtienvkakiqdkegippdqqrlifagkqledgrtlsdyn
iqkestlhlvlrl

  • Chain 'D':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >5xitD (D:)
mqifvktltgktitlevepsdtienvkakiqdkegippdqqrlifagkqledgrtlsdyn
iqrestlhlvlrlrgg

  • Chain 'E':
    No sequence available.

  • Chain 'F':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >5xitF (F:)
mqifvktltgktitlevepsdtienvkakiqdkegippdqqrlifagkqledgrtlsdyn
iqrestlhlvlrlrgg

  • Chain 'H':
    Sequence, based on SEQRES records: (download) 
    >5xitH (H:)
mqifvktltgktitlevepsdtienvkakiqdkegippdqqrlifagkqledgrtlsdyn
iqkestlhlvlrlrggd

    Sequence, based on observed residues (ATOM records): (download) 
    >5xitH (H:)
mqifvktltgktitlevepsdtienvkakiqdkegippdqqrlifagkqledgrtlsdyn
iqkestlhlvlrlr