PDB entry 5xf9

View 5xf9 on RCSB PDB site
Description: Crystal structure of NAD+-reducing [NiFe]-hydrogenase in the air-oxidized state
Class: oxidoreductase
Keywords: hydrogenase, Ni-Fe, Fe-S, OXIDOREDUCTASE
Deposited on 2017-04-09, released 2017-08-23
The last revision prior to the SCOPe 2.07 freeze date was dated 2017-09-20, with a file datestamp of 2017-09-15.
Experiment type: XRAY
Resolution: 2.58 Å
R-factor: N/A
AEROSPACI score: 0.19 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: NAD-reducing hydrogenase
    Species: Hydrogenophilus thermoluteolus [TaxId:297]
    Database cross-references and differences (RAF-indexed):
  • Chain 'B':
    Compound: NAD-reducing hydrogenase
    Species: Hydrogenophilus thermoluteolus [TaxId:297]
    Database cross-references and differences (RAF-indexed):
  • Chain 'C':
    Compound: NAD-reducing hydrogenase
    Species: Hydrogenophilus thermoluteolus [TaxId:297]
    Database cross-references and differences (RAF-indexed):
  • Chain 'D':
    Compound: NAD-reducing hydrogenase
    Species: Hydrogenophilus thermoluteolus [TaxId:297]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d5xf9d_
  • Chain 'E':
    Compound: NAD-reducing hydrogenase
    Species: Hydrogenophilus thermoluteolus [TaxId:297]
    Database cross-references and differences (RAF-indexed):
  • Chain 'F':
    Compound: NAD-reducing hydrogenase
    Species: Hydrogenophilus thermoluteolus [TaxId:297]
    Database cross-references and differences (RAF-indexed):
  • Chain 'G':
    Compound: NAD-reducing hydrogenase
    Species: Hydrogenophilus thermoluteolus [TaxId:297]
    Database cross-references and differences (RAF-indexed):
  • Chain 'H':
    Compound: NAD-reducing hydrogenase
    Species: Hydrogenophilus thermoluteolus [TaxId:297]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d5xf9h_
  • Heterogens: FMN, SF4, FES, FCO, 3NI, MG, HOH

PDB Chain Sequences:

  • Chain 'A':
    No sequence available.

  • Chain 'B':
    No sequence available.

  • Chain 'C':
    No sequence available.

  • Chain 'D':
    Sequence, based on SEQRES records: (download) 
    >5xf9D (D:)
mtqhapqavsprpslpanatrrvaidplsrveghgkvtiwldddgqvvearlhivefrgf
eafivgrpyweapvvvqrlcgicpvshhlaaakaldrlvgvtqlpptaekmrrlmhygqv
lqshalhffylaapdlllgfsadpaqrnvfglaaqkrelarqgilvrqfgqecieatagk
rihgtsavpggihknlsrrermallsrapeirswceaavalierlftehapffaqfgsfq
tktfslvaadgsldlydgtfrvkeangailidhydpndydqllveavrpwsymkfpylka
ygepdgfyrvgpsarlincdrlttaraeaarqrfltfdqgtvahstlgyhwarliemlhc
aeliealltdadleggelrargqrqhrgvgvieaprgtlihhyevgdddlitycnlivst
thnnavmnqavttaakaflsgvtlteallnhievavrafdpclscath

    Sequence, based on observed residues (ATOM records): (download) 
    >5xf9D (D:)
slpanatrrvaidplsrveghgkvtiwldddgqvvearlhivefrgfeafivgrpyweap
vvvqrlcgicpvshhlaaakaldrlvgvtqlpptaekmrrlmhygqvlqshalhffylaa
pdlllgfsadpaqrnvfglaaqkrelarqgilvrqfgqecieatagkrihgtsavpggih
knlsrrermallsrapeirswceaavalierlftehapffaqfgsfqtktfslvaadgsl
dlydgtfrvkeangailidhydpndydqllveavrpwsymkfpylkaygepdgfyrvgps
arlincdrlttaraeaarqrfltfdqgtvahstlgyhwarliemlhcaeliealltdadl
eggelrargqrqhrgvgvieaprgtlihhyevgdddlitycnlivstthnnavmnqavtt
aakaflsgvtlteallnhievavrafdpclscath

  • Chain 'E':
    No sequence available.

  • Chain 'F':
    No sequence available.

  • Chain 'G':
    No sequence available.

  • Chain 'H':
    Sequence, based on SEQRES records: (download) 
    >5xf9H (H:)
mtqhapqavsprpslpanatrrvaidplsrveghgkvtiwldddgqvvearlhivefrgf
eafivgrpyweapvvvqrlcgicpvshhlaaakaldrlvgvtqlpptaekmrrlmhygqv
lqshalhffylaapdlllgfsadpaqrnvfglaaqkrelarqgilvrqfgqecieatagk
rihgtsavpggihknlsrrermallsrapeirswceaavalierlftehapffaqfgsfq
tktfslvaadgsldlydgtfrvkeangailidhydpndydqllveavrpwsymkfpylka
ygepdgfyrvgpsarlincdrlttaraeaarqrfltfdqgtvahstlgyhwarliemlhc
aeliealltdadleggelrargqrqhrgvgvieaprgtlihhyevgdddlitycnlivst
thnnavmnqavttaakaflsgvtlteallnhievavrafdpclscath

    Sequence, based on observed residues (ATOM records): (download) 
    >5xf9H (H:)
lpanatrrvaidplsrveghgkvtiwldddgqvvearlhivefrgfeafivgrpyweapv
vvqrlcgicpvshhlaaakaldrlvgvtqlpptaekmrrlmhygqvlqshalhffylaap
dlllgfsadpaqrnvfglaaqkrelarqgilvrqfgqecieatagkrihgtsavpggihk
nlsrrermallsrapeirswceaavalierlftehapffaqfgsfqtktfslvaadgsld
lydgtfrvkeangailidhydpndydqllveavrpwsymkfpylkaygepdgfyrvgpsa
rlincdrlttaraeaarqrfltfdqgtvahstlgyhwarliemlhcaeliealltdadle
ggelrargqrqhrgvgvieaprgtlihhyevgdddlitycnlivstthnnavmnqavtta
akaflsgvtlteallnhievavrafdpclscath