PDB entry 5xd8

View 5xd8 on RCSB PDB site
Description: Crystal structure analysis of 3,6-anhydro-L-galactonate cycloisomerase
Class: isomerase
Keywords: Enolase superfamily, 3, 6-anhydro-L-galactonate cycloisomerase, lyase, barrel domain, capping domain, ISOMERASE
Deposited on 2017-03-27, released 2017-09-27
The last revision prior to the SCOPe 2.08 freeze date was dated 2017-09-27, with a file datestamp of 2017-09-22.
Experiment type: XRAY
Resolution: 2.51 Å
R-factor: N/A
AEROSPACI score: 0.2 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: 3,6-anhydro-alpha-L-galactonate cycloisomerase
    Species: Vibrio sp. (strain EJY3) [TaxId:1116375]
    Gene: Vejaci, VEJY3_09370
    Database cross-references and differences (RAF-indexed):
    • Uniprot H2IFX0 (0-361)
      • expression tag (362)
    Domains in SCOPe 2.08: d5xd8a1, d5xd8a2, d5xd8a3
  • Chain 'B':
    Compound: 3,6-anhydro-alpha-L-galactonate cycloisomerase
    Species: Vibrio sp. (strain EJY3) [TaxId:1116375]
    Gene: Vejaci, VEJY3_09370
    Database cross-references and differences (RAF-indexed):
    • Uniprot H2IFX0 (0-361)
      • expression tag (362-366)
    Domains in SCOPe 2.08: d5xd8b1, d5xd8b2, d5xd8b3
  • Heterogens: MG, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >5xd8A (A:)
mkttikdiktrlfkiplkeilsdakhgdhdhfelitttvtledgsqgtgytytggkggys
ikamleydiqpaligkdatqieeiydfmewhihyvgrggistfamsavdialwdlkgkre
glplwkmaggknntckaycggidlqfplekllnnicgylesgfnavkikigrenmqedid
rikavreligpditfmidanysltveqaiklskaveqyditwfeeptlpddykgfaeiad
ntaiplamgenlhtihefgyamdqaklgycqpdasncggitgwlkaadlitehnipvcth
gmqelhvslvsafdtgwlevhsfpideytkrplvvenfravasnepgigvefdwdkiaqy
evhhhhhh

    Sequence, based on observed residues (ATOM records): (download) 
    >5xd8A (A:)
mkttikdiktrlfkiplkdhfelitttvtledgsqgtgytytggkggysikamleydiqp
aligkdatqieeiydfmewhihyvgrggistfamsavdialwdlkgkreglplwkmaggk
nntckaycggidlqfplekllnnicgylesgfnavkikigrenmqedidrikavreligp
ditfmidanysltveqaiklskaveqyditwfeeptlpddykgfaeiadntaiplamgen
lhtihefgyamdqaklgycqpdasncggitgwlkaadlitehnipvcthgmqelhvslvs
afdtgwlevhsfpideytkrplvvenfravasnepgigvefdwdkiaqyevh

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >5xd8B (B:)
mkttikdiktrlfkiplkeilsdakhgdhdhfelitttvtledgsqgtgytytggkggys
ikamleydiqpaligkdatqieeiydfmewhihyvgrggistfamsavdialwdlkgkre
glplwkmaggknntckaycggidlqfplekllnnicgylesgfnavkikigrenmqedid
rikavreligpditfmidanysltveqaiklskaveqyditwfeeptlpddykgfaeiad
ntaiplamgenlhtihefgyamdqaklgycqpdasncggitgwlkaadlitehnipvcth
gmqelhvslvsafdtgwlevhsfpideytkrplvvenfravasnepgigvefdwdkiaqy
evhhhhhh

    Sequence, based on observed residues (ATOM records): (download) 
    >5xd8B (B:)
mkttikdiktrlfkiplkeilsdakhgdhdhfelitttvtledgsqgtgytytggkggys
ikamleydiqpaligkdatqieeiydfmewhihyvgrggistfamsavdialwdlkgkre
glplwkmaggknntckaycggidlqfplekllnnicgylesgfnavkikigrenmqedid
rikavreligpditfmidanysltveqaiklskaveqyditwfeeptlpddykgfaeiad
ntaiplamgenlhtihefgyamdqaklgycqpdasncggitgwlkaadlitehnipvcth
gmqelhvslvsafdtgwlevhsfpideytkrplvvenfravasnepgigvefdwdkiaqy
evhhhhh