PDB entry 5x5w

View 5x5w on RCSB PDB site
Description: Crystal structure of pseudorabies virus glycoprotein D
Class: viral protein/cell adhesion
Keywords: herpes simplex virus, pseudorabies virus, glycoprotein D, VIRAL PROTEIN-CELL ADHESION complex
Deposited on 2017-02-17, released 2017-04-26
The last revision prior to the SCOPe 2.08 freeze date was dated 2017-04-26, with a file datestamp of 2017-04-21.
Experiment type: XRAY
Resolution: 2.7 Å
R-factor: N/A
AEROSPACI score: 0.17 (click here for full SPACI score report)

Chains and heterogens:

• Chain 'A':
  Compound: gd
  Species: Suid herpesvirus 1 [TaxId:10345]
  Gene: US6
  Database cross-references and differences (RAF-indexed):
  • Uniprot G3G933
• Chain 'B':
  Compound: Nectin-1
  Species: Sus scrofa [TaxId:9823]
  Gene: NECTIN1, HVEC, PRR1, PVRL1
  Database cross-references and differences (RAF-indexed):
  • Uniprot Q9GL76 (0-106)
  Domains in SCOPe 2.08: d5x5wb_
• Chain 'C':
  Compound: gd
  Species: Suid herpesvirus 1 [TaxId:10345]
  Gene: US6
  Database cross-references and differences (RAF-indexed):
  • Uniprot G3G933
• Chain 'D':
  Compound: Nectin-1
  Species: Sus scrofa [TaxId:9823]
  Gene: NECTIN1, HVEC, PRR1, PVRL1
  Database cross-references and differences (RAF-indexed):
  • Uniprot Q9GL76 (0-106)
  Domains in SCOPe 2.08: d5x5wd_
• Heterogens: HOH

PDB Chain Sequences:

• Chain 'A':
  No sequence available.
  
  
• Chain 'B':
  Sequence; same for both SEQRES and ATOM records: (download)
  

  >5x5wB (B:)
  dsmygfigtdvvlhcsfanplpgvkitqvtwqkatngskqnvaiynpamgvsvlapyrer
  veflrpsftdgtirlsrleledegvyicefatfpagnresqlnltvm
  

  
  
• Chain 'C':
  No sequence available.
  
  
• Chain 'D':
  Sequence; same for both SEQRES and ATOM records: (download)
  

  >5x5wD (D:)
  dsmygfigtdvvlhcsfanplpgvkitqvtwqkatngskqnvaiynpamgvsvlapyrer
  veflrpsftdgtirlsrleledegvyicefatfpagnresqlnltvm