PDB entry 5ww9

View 5ww9 on RCSB PDB site
Description: Crystal structure of R73E mutant of the second DNA-Binding protein under starvation from Mycobacterium smegmatis
Class: DNA binding protein
Keywords: ferritin-like fold, DNA binding, ferroxidation, OXIDOREDUCTASE, DNA BINDING PROTEIN
Deposited on 2016-12-31, released 2017-08-09
The last revision prior to the SCOPe 2.06 freeze date was dated 2017-08-09, with a file datestamp of 2017-08-04.
Experiment type: XRAY
Resolution: 2 Å
R-factor: N/A
AEROSPACI score: 0.32 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Putative starvation-induced DNA protecting protein/Ferritin and Dps
    Species: Mycobacterium smegmatis str. MC2 155 [TaxId:246196]
    Gene: MSMEG_3242, MSMEI_3159
    Database cross-references and differences (RAF-indexed):
    • Uniprot A0QXB7 (0-160)
      • engineered mutation (72)
    Domains in SCOPe 2.06: d5ww9a_
  • Chain 'B':
    Compound: Putative starvation-induced DNA protecting protein/Ferritin and Dps
    Species: Mycobacterium smegmatis str. MC2 155 [TaxId:246196]
    Gene: MSMEG_3242, MSMEI_3159
    Database cross-references and differences (RAF-indexed):
    • Uniprot A0QXB7 (Start-160)
      • engineered mutation (72)
    Domains in SCOPe 2.06: d5ww9b_
  • Chain 'C':
    Compound: Putative starvation-induced DNA protecting protein/Ferritin and Dps
    Species: Mycobacterium smegmatis str. MC2 155 [TaxId:246196]
    Gene: MSMEG_3242, MSMEI_3159
    Database cross-references and differences (RAF-indexed):
    • Uniprot A0QXB7 (Start-160)
      • engineered mutation (72)
    Domains in SCOPe 2.06: d5ww9c_
  • Chain 'D':
    Compound: Putative starvation-induced DNA protecting protein/Ferritin and Dps
    Species: Mycobacterium smegmatis str. MC2 155 [TaxId:246196]
    Gene: MSMEG_3242, MSMEI_3159
    Database cross-references and differences (RAF-indexed):
    • Uniprot A0QXB7 (0-160)
      • engineered mutation (72)
    Domains in SCOPe 2.06: d5ww9d_
  • Heterogens: MG, CL, FE, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence; same for both SEQRES and ATOM records: (download)
    >5ww9A (A:)
    msarrtesdiqgfhatpefggnlqkvlvdlielslqgkqahwnvvgsnfrdlhlqldelv
    dfaregsdtiaeemraldavpdgrsdtvaatttlpefpaferstadvvdlittrinatvd
    tirrvhdavdaedpstadllhglidglekqawlirsenrkv
    

  • Chain 'B':
    Sequence, based on SEQRES records: (download)
    >5ww9B (B:)
    msarrtesdiqgfhatpefggnlqkvlvdlielslqgkqahwnvvgsnfrdlhlqldelv
    dfaregsdtiaeemraldavpdgrsdtvaatttlpefpaferstadvvdlittrinatvd
    tirrvhdavdaedpstadllhglidglekqawlirsenrkv
    

    Sequence, based on observed residues (ATOM records): (download)
    >5ww9B (B:)
    sarrtediqgfhatpefggnlqkvlvdlielslqgkqahwnvvgsnfrdlhlqldelvdf
    aregsdtiaeemraldavpdgrsdtvaatttlpefpaferstadvvdlittrinatvdti
    rrvhdavdaedpstadllhglidglekqawlirsenrkv
    

  • Chain 'C':
    Sequence, based on SEQRES records: (download)
    >5ww9C (C:)
    msarrtesdiqgfhatpefggnlqkvlvdlielslqgkqahwnvvgsnfrdlhlqldelv
    dfaregsdtiaeemraldavpdgrsdtvaatttlpefpaferstadvvdlittrinatvd
    tirrvhdavdaedpstadllhglidglekqawlirsenrkv
    

    Sequence, based on observed residues (ATOM records): (download)
    >5ww9C (C:)
    sarrtesdiqgfhatpefggnlqkvlvdlielslqgkqahwnvvgsnfrdlhlqldelvd
    faregsdtiaeemraldavpdgrsdtvaatttlpefpaferstadvvdlittrinatvdt
    irrvhdavdaedpstadllhglidglekqawlirsenrkv
    

  • Chain 'D':
    Sequence; same for both SEQRES and ATOM records: (download)
    >5ww9D (D:)
    msarrtesdiqgfhatpefggnlqkvlvdlielslqgkqahwnvvgsnfrdlhlqldelv
    dfaregsdtiaeemraldavpdgrsdtvaatttlpefpaferstadvvdlittrinatvd
    tirrvhdavdaedpstadllhglidglekqawlirsenrkv