PDB entry 5ww5
View 5ww5 on RCSB PDB site
Description: Crystal structure of the second DNA-Binding protein under starvation from Mycobacterium smegmatis soaked with iron in the ratio of 100 iron atoms per dodecamer
Class: DNA binding protein
Keywords: ferritin-like fold, DNA binding, ferroxidation, OXIDOREDUCTASE, DNA BINDING PROTEIN
Deposited on
2016-12-31, released
2017-08-09
The last revision prior to the SCOPe 2.06 freeze date was dated
2017-08-09, with a file datestamp of
2017-08-04.
Experiment type: XRAY
Resolution: 2.04 Å
R-factor: N/A
AEROSPACI score: 0.31
(click here for full SPACI score report)
Chains and heterogens:
- Chain 'A':
Compound: Putative starvation-induced DNA protecting protein/Ferritin and Dps
Species: Mycobacterium smegmatis str. MC2 155 [TaxId:246196]
Gene: MSMEG_3242, MSMEI_3159
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.06: d5ww5a_ - Chain 'B':
Compound: Putative starvation-induced DNA protecting protein/Ferritin and Dps
Species: Mycobacterium smegmatis str. MC2 155 [TaxId:246196]
Gene: MSMEG_3242, MSMEI_3159
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.06: d5ww5b_ - Chain 'C':
Compound: Putative starvation-induced DNA protecting protein/Ferritin and Dps
Species: Mycobacterium smegmatis str. MC2 155 [TaxId:246196]
Gene: MSMEG_3242, MSMEI_3159
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.06: d5ww5c_ - Chain 'D':
Compound: Putative starvation-induced DNA protecting protein/Ferritin and Dps
Species: Mycobacterium smegmatis str. MC2 155 [TaxId:246196]
Gene: MSMEG_3242, MSMEI_3159
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.06: d5ww5d_ - Heterogens: FE, FE2, MG, CL, HOH
PDB Chain Sequences:
- Chain 'A':
Sequence; same for both SEQRES and ATOM records: (download)
>5ww5A (A:)
msarrtesdiqgfhatpefggnlqkvlvdlielslqgkqahwnvvgsnfrdlhlqldelv
dfaregsdtiaermraldavpdgrsdtvaatttlpefpaferstadvvdlittrinatvd
tirrvhdavdaedpstadllhglidglekqawlirsenrkv
- Chain 'B':
Sequence, based on SEQRES records: (download)
>5ww5B (B:)
msarrtesdiqgfhatpefggnlqkvlvdlielslqgkqahwnvvgsnfrdlhlqldelv
dfaregsdtiaermraldavpdgrsdtvaatttlpefpaferstadvvdlittrinatvd
tirrvhdavdaedpstadllhglidglekqawlirsenrkv
Sequence, based on observed residues (ATOM records): (download)
>5ww5B (B:)
sarrtesdiqgfhatpefggnlqkvlvdlielslqgkqahwnvvgsnfrdlhlqldelvd
faregsdtiaermraldavpdgrsdtvaatttlpefpaferstadvvdlittrinatvdt
irrvhdavdaedpstadllhglidglekqawlirsenrkv
- Chain 'C':
Sequence, based on SEQRES records: (download)
>5ww5C (C:)
msarrtesdiqgfhatpefggnlqkvlvdlielslqgkqahwnvvgsnfrdlhlqldelv
dfaregsdtiaermraldavpdgrsdtvaatttlpefpaferstadvvdlittrinatvd
tirrvhdavdaedpstadllhglidglekqawlirsenrkv
Sequence, based on observed residues (ATOM records): (download)
>5ww5C (C:)
sarrtesdiqgfhatpefggnlqkvlvdlielslqgkqahwnvvgsnfrdlhlqldelvd
faregsdtiaermraldavpdgrsdtvaatttlpefpaferstadvvdlittrinatvdt
irrvhdavdaedpstadllhglidglekqawlirsenrkv
- Chain 'D':
Sequence; same for both SEQRES and ATOM records: (download)
>5ww5D (D:)
msarrtesdiqgfhatpefggnlqkvlvdlielslqgkqahwnvvgsnfrdlhlqldelv
dfaregsdtiaermraldavpdgrsdtvaatttlpefpaferstadvvdlittrinatvd
tirrvhdavdaedpstadllhglidglekqawlirsenrkv