PDB entry 5wvo
View 5wvo on RCSB PDB site
Description: Crystal structure of DNMT1 RFTS domain in complex with K18/K23 mono-ubiquitylated histone H3
Class: signaling protein/transferase
Keywords: DNA methylation, Ubiquitination, SIGNALING PROTEIN-TRANSFERASE complex
Deposited on
2016-12-28, released
2017-11-15
The last revision prior to the SCOPe 2.08 freeze date was dated
2017-11-15, with a file datestamp of
2017-11-10.
Experiment type: XRAY
Resolution: 2 Å
R-factor: N/A
AEROSPACI score: 0.31
(click here for full SPACI score report)
Chains and heterogens:
- Chain 'A':
Compound: Ubiquitin
Species: Homo sapiens [TaxId:9606]
Gene: Rps27a, Uba80, Ubcep1
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.08: d5wvoa_ - Chain 'B':
Compound: Ubiquitin
Species: Homo sapiens [TaxId:9606]
Gene: Rps27a, Uba80, Ubcep1
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.08: d5wvob_ - Chain 'C':
Compound: DNA (cytosine-5)-methyltransferase 1
Species: Homo sapiens [TaxId:9606]
Gene: DNMT1, AIM, CXXC9, DNMT
Database cross-references and differences (RAF-indexed):
- Chain 'D':
Compound: Histone H3.1
Species: Homo sapiens [TaxId:9606]
Gene: HIST1H3A, H3FA, HIST1H3B, H3FL, HIST1H3C, H3FC, HIST1H3D, H3FB, HIST1H3E, H3FD, HIST1H3F, H3FI, HIST1H3G, H3FH, HIST1H3H, H3FK, HIST1H3I, H3FF, HIST1H3J, H3FJ
Database cross-references and differences (RAF-indexed):
- Heterogens: ZN, HOH