PDB entry 5wmf

View 5wmf on RCSB PDB site
Description: Crystal structure of the Hexameric Ring of Epstein-Barr Virus Nuclear Antigen-1, EBNA1
Class: viral protein
Keywords: EBNA1, DNA binding protein, Epstein-Barr Virus, viral protein
Deposited on 2017-07-28, released 2017-08-09
The last revision prior to the SCOPe 2.07 freeze date was dated 2017-09-27, with a file datestamp of 2017-09-22.
Experiment type: XRAY
Resolution: 1.9 Å
R-factor: N/A
AEROSPACI score: 0.33 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Epstein-Barr nuclear antigen 1
    Species: Epstein-Barr virus [TaxId:10377]
    Gene: EBNA1, BKRF1
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d5wmfa_
  • Chain 'B':
    Compound: Epstein-Barr nuclear antigen 1
    Species: Epstein-Barr virus [TaxId:10377]
    Gene: EBNA1, BKRF1
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d5wmfb_
  • Chain 'C':
    Compound: Epstein-Barr nuclear antigen 1
    Species: Epstein-Barr virus [TaxId:10377]
    Gene: EBNA1, BKRF1
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d5wmfc_
  • Chain 'D':
    Compound: Epstein-Barr nuclear antigen 1
    Species: Epstein-Barr virus [TaxId:10377]
    Gene: EBNA1, BKRF1
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d5wmfd_
  • Chain 'E':
    Compound: Epstein-Barr nuclear antigen 1
    Species: Epstein-Barr virus [TaxId:10377]
    Gene: EBNA1, BKRF1
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d5wmfe_
  • Chain 'F':
    Compound: Epstein-Barr nuclear antigen 1
    Species: Epstein-Barr virus [TaxId:10377]
    Gene: EBNA1, BKRF1
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d5wmff_
  • Heterogens: HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >5wmfA (A:)
gshmgqggsnpkfeniaeglrallarshverttdegtwvagvfvyggsktslynlrrgta
laipqcrltplsrlpfgmapgpgpqpgplresivcyfmvflqthifaevlkdaikdlvmt
kpaptcnirvtvcsfddgvdlppwfppmvegaaa

    Sequence, based on observed residues (ATOM records): (download) 
    >5wmfA (A:)
npkfeniaeglrallarshverttdegtwvagvfvyggsktslynlrrgtalaipqcrlt
plsrlpfgmapgpgpqpgplresivcyfmvflqthifaevlkdaikdlvmtkpaptcnir
vtvcsfddgvdlppwfp

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >5wmfB (B:)
gshmgqggsnpkfeniaeglrallarshverttdegtwvagvfvyggsktslynlrrgta
laipqcrltplsrlpfgmapgpgpqpgplresivcyfmvflqthifaevlkdaikdlvmt
kpaptcnirvtvcsfddgvdlppwfppmvegaaa

    Sequence, based on observed residues (ATOM records): (download) 
    >5wmfB (B:)
npkfeniaeglrallarshverttdegtwvagvfvyggsktslynlrrgtalaipqcrlt
plsrlpfgmapgpgpqpgplresivcyfmvflqthifaevlkdaikdlvmtkpaptcnir
vtvcsfddgvdlppwfp

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >5wmfC (C:)
gshmgqggsnpkfeniaeglrallarshverttdegtwvagvfvyggsktslynlrrgta
laipqcrltplsrlpfgmapgpgpqpgplresivcyfmvflqthifaevlkdaikdlvmt
kpaptcnirvtvcsfddgvdlppwfppmvegaaa

    Sequence, based on observed residues (ATOM records): (download) 
    >5wmfC (C:)
pkfeniaeglrallarshverttdegtwvagvfvyggsktslynlrrgtalaipqcrltp
lsrlpfgmapgpgpqpgplresivcyfmvflqthifaevlkdaikdlvmtkpaptcnirv
tvcsfddgvdlppwfppm

  • Chain 'D':
    Sequence, based on SEQRES records: (download) 
    >5wmfD (D:)
gshmgqggsnpkfeniaeglrallarshverttdegtwvagvfvyggsktslynlrrgta
laipqcrltplsrlpfgmapgpgpqpgplresivcyfmvflqthifaevlkdaikdlvmt
kpaptcnirvtvcsfddgvdlppwfppmvegaaa

    Sequence, based on observed residues (ATOM records): (download) 
    >5wmfD (D:)
npkfeniaeglrallarshverttdegtwvagvfvyggsktslynlrrgtalaipqcrlt
plsrlpfgmapgpgpqpgplresivcyfmvflqthifaevlkdaikdlvmtkpaptcnir
vtvcsfddgvdlppwfp

  • Chain 'E':
    Sequence, based on SEQRES records: (download) 
    >5wmfE (E:)
gshmgqggsnpkfeniaeglrallarshverttdegtwvagvfvyggsktslynlrrgta
laipqcrltplsrlpfgmapgpgpqpgplresivcyfmvflqthifaevlkdaikdlvmt
kpaptcnirvtvcsfddgvdlppwfppmvegaaa

    Sequence, based on observed residues (ATOM records): (download) 
    >5wmfE (E:)
kfeniaeglrallarshverttdegtwvagvfvyggsktslynlrrgtalaipqcrltpl
srlpfgmapgpgpqpgplresivcyfmvflqthifaevlkdaikdlvmtkpaptcnirvt
vcsfddgvdlppwfp

  • Chain 'F':
    Sequence, based on SEQRES records: (download) 
    >5wmfF (F:)
gshmgqggsnpkfeniaeglrallarshverttdegtwvagvfvyggsktslynlrrgta
laipqcrltplsrlpfgmapgpgpqpgplresivcyfmvflqthifaevlkdaikdlvmt
kpaptcnirvtvcsfddgvdlppwfppmvegaaa

    Sequence, based on observed residues (ATOM records): (download) 
    >5wmfF (F:)
snpkfeniaeglrallarshverttdegtwvagvfvyggsktslynlrrgtalaipqcrl
tplsrlpfgmapgpgpqpgplresivcyfmvflqthifaevlkdaikdlvmtkpaptcni
rvtvcsfddgvdlppwfppm