PDB entry 5wl1

View 5wl1 on RCSB PDB site
Description: Crystal Structure of Human CD1b in Complex with PG
Class: immune system
Keywords: antigen presenting molecule, PG, phospholipid, MHC, CD1b, IMMUNE SYSTEM
Deposited on 2017-07-25, released 2017-11-01
The last revision prior to the SCOPe 2.07 freeze date was dated 2017-11-01, with a file datestamp of 2017-10-27.
Experiment type: XRAY
Resolution: 1.38 Å
R-factor: N/A
AEROSPACI score: 0.54 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: T-cell surface glycoprotein cd1b
    Species: Homo sapiens [TaxId:9606]
    Gene: CD1B
    Database cross-references and differences (RAF-indexed):
    • Uniprot P29016 (Start-276)
      • expression tag (277-281)
    Domains in SCOPe 2.07: d5wl1a1, d5wl1a2, d5wl1a3
  • Chain 'B':
    Compound: Beta-2-microglobulin
    Species: Homo sapiens [TaxId:9606]
    Gene: B2M, CDABP0092, HDCMA22P
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d5wl1b_
  • Heterogens: CUY, IOD, NAG, FUC, MAN, BMA, CL, NA, EDO, D3D, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download)
    >5wl1A (A:)
    hafqgptsfhviqtssftnstwaqtqgsgwlddlqihgwdsdsgtaiflkpwskgnfsdk
    evaeleeifrvyifgfarevqdfagdfqmkypfeiqgiagcelhsggaivsflrgalggl
    dflsvknascvpspeggsraqkfcaliiqyqgimetvrillyetcpryllgvlnagkadl
    qrqvkpeawlssgpspgpgrlqlvchvsgfypkpvwvmwmrgeqeqqgtqlgdilpnanw
    twylratldvadgeaaglscrvkhsslegqdiilywrgsglndifeaqkiewhehhhhhh
    

    Sequence, based on observed residues (ATOM records): (download)
    >5wl1A (A:)
    fqgptsfhviqtssftnstwaqtqgsgwlddlqihgwdsdsgtaiflkpwskgnfsdkev
    aeleeifrvyifgfarevqdfagdfqmkypfeiqgiagcelhsggaivsflrgalggldf
    lsvknascvpspeggsraqkfcaliiqyqgimetvrillyetcpryllgvlnagkadlqr
    qvkpeawlssgpspgpgrlqlvchvsgfypkpvwvmwmrgeqeqqgtqlgdilpnanwtw
    ylratldvadgeaaglscrvkhsslegqdiilywrgsgln
    

  • Chain 'B':
    Sequence, based on SEQRES records: (download)
    >5wl1B (B:)
    iqrtpkiqvysrhpaengksnflncyvsgfhpsdievdllkngeriekvehsdlsfskdw
    sfyllyyteftptekdeyacrvnhvtlsqpkivkwdrdm
    

    Sequence, based on observed residues (ATOM records): (download)
    >5wl1B (B:)
    iqrtpkiqvysrhpaengksnflncyvsgfhpsdievdllkngeriekvehsdlsfskdw
    sfyllyyteftptekdeyacrvnhvtlsqpkivkwdrd