PDB entry 5w5d

View 5w5d on RCSB PDB site
Description: Crystal structure of the primed SNARE-Complexin-Synaptotagmin-1 C2B complex
Class: exocytosis
Keywords: Prefusion primed complex, Neuronal Exocytosis, Synaptotagmin, SNARE complex, Complexin, synchronous neurotransmitter release, EXOCYTOSIS
Deposited on 2017-06-14, released 2017-08-23
The last revision prior to the SCOPe 2.08 freeze date was dated 2017-09-06, with a file datestamp of 2017-09-01.
Experiment type: XRAY
Resolution: 2.5 Å
R-factor: N/A
AEROSPACI score: 0.22 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: vesicle-associated membrane protein 2
    Species: Rattus norvegicus [TaxId:10116]
    Gene: Vamp2, Syb2
    Database cross-references and differences (RAF-indexed):
  • Chain 'B':
    Compound: syntaxin-1a
    Species: Rattus norvegicus [TaxId:10116]
    Gene: Stx1a, Sap
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d5w5db_
  • Chain 'C':
    Compound: synaptosomal-associated protein 25
    Species: Rattus norvegicus [TaxId:10116]
    Gene: SNAP25, SNAP
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d5w5dc_
  • Chain 'D':
    Compound: synaptosomal-associated protein 25
    Species: Rattus norvegicus [TaxId:10116]
    Gene: SNAP25, SNAP
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d5w5dd_
  • Chain 'E':
    Compound: Complexin-1
    Species: Rattus norvegicus [TaxId:10116]
    Gene: CPLX1
    Database cross-references and differences (RAF-indexed):
  • Chain 'F':
    Compound: Synaptotagmin-1
    Species: Rattus norvegicus [TaxId:10116]
    Gene: Syt1
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d5w5df_
  • Heterogens: MG, HOH

PDB Chain Sequences:

  • Chain 'A':
    No sequence available.

  • Chain 'B':
    Sequence, based on SEQRES records: (download)
    >5w5dB (B:)
    malseietrhseiiklensirelhdmfmdmamlvesqgemidrieynvehavdyveravs
    dtkkavk
    

    Sequence, based on observed residues (ATOM records): (download)
    >5w5dB (B:)
    lseietrhseiiklensirelhdmfmdmamlvesqgemidrieynvehavdyve
    

  • Chain 'C':
    Sequence, based on SEQRES records: (download)
    >5w5dC (C:)
    mrneleemqrradqladeslestrrmlqlveeskdagirtlvmldeqgeqldrveegmnh
    inqdmkeaeknlkdlgk
    

    Sequence, based on observed residues (ATOM records): (download)
    >5w5dC (C:)
    leemqrradqladeslestrrmlqlveeskdagirtlvmldeqgeqldrveegmnhinqd
    m
    

  • Chain 'D':
    Sequence, based on SEQRES records: (download)
    >5w5dD (D:)
    marenemdenleqvsgiignlrhmaldmgneidtqnrqidrimekadsnktrideanqra
    tkmlg
    

    Sequence, based on observed residues (ATOM records): (download)
    >5w5dD (D:)
    renemdenleqvsgiignlrhmaldmgneidtqnrqidrimekadsnktridea
    

  • Chain 'E':
    No sequence available.

  • Chain 'F':
    Sequence; same for both SEQRES and ATOM records: (download)
    >5w5dF (F:)
    qeklgdicfslryvptagkltvvileaknlkkmdvgglsdpyvkihlmqngkrlkkkktt
    ikkntlnpyynesfsfevpfeqiqkvqvvvtvldydkigkndaigkvfvgynstgaelrh
    wsdmlanprrpiaqwhtlqveeevdamlavkk