PDB entry 5w5d
View 5w5d on RCSB PDB site
Description: Crystal structure of the primed SNARE-Complexin-Synaptotagmin-1 C2B complex
Class: exocytosis
Keywords: Prefusion primed complex, Neuronal Exocytosis, Synaptotagmin, SNARE complex, Complexin, synchronous neurotransmitter release, EXOCYTOSIS
Deposited on
2017-06-14, released
2017-08-23
The last revision prior to the SCOPe 2.08 freeze date was dated
2017-09-06, with a file datestamp of
2017-09-01.
Experiment type: XRAY
Resolution: 2.5 Å
R-factor: N/A
AEROSPACI score: 0.22
(click here for full SPACI score report)
Chains and heterogens:
- Chain 'A':
Compound: vesicle-associated membrane protein 2
Species: Rattus norvegicus [TaxId:10116]
Gene: Vamp2, Syb2
Database cross-references and differences (RAF-indexed):
- Chain 'B':
Compound: syntaxin-1a
Species: Rattus norvegicus [TaxId:10116]
Gene: Stx1a, Sap
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.08: d5w5db_ - Chain 'C':
Compound: synaptosomal-associated protein 25
Species: Rattus norvegicus [TaxId:10116]
Gene: SNAP25, SNAP
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.08: d5w5dc_ - Chain 'D':
Compound: synaptosomal-associated protein 25
Species: Rattus norvegicus [TaxId:10116]
Gene: SNAP25, SNAP
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.08: d5w5dd_ - Chain 'E':
Compound: Complexin-1
Species: Rattus norvegicus [TaxId:10116]
Gene: CPLX1
Database cross-references and differences (RAF-indexed):
- Chain 'F':
Compound: Synaptotagmin-1
Species: Rattus norvegicus [TaxId:10116]
Gene: Syt1
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.08: d5w5df_ - Heterogens: MG, HOH
PDB Chain Sequences:
- Chain 'A':
No sequence available.
- Chain 'B':
Sequence, based on SEQRES records: (download)
>5w5dB (B:)
malseietrhseiiklensirelhdmfmdmamlvesqgemidrieynvehavdyveravs
dtkkavk
Sequence, based on observed residues (ATOM records): (download)
>5w5dB (B:)
lseietrhseiiklensirelhdmfmdmamlvesqgemidrieynvehavdyve
- Chain 'C':
Sequence, based on SEQRES records: (download)
>5w5dC (C:)
mrneleemqrradqladeslestrrmlqlveeskdagirtlvmldeqgeqldrveegmnh
inqdmkeaeknlkdlgk
Sequence, based on observed residues (ATOM records): (download)
>5w5dC (C:)
leemqrradqladeslestrrmlqlveeskdagirtlvmldeqgeqldrveegmnhinqd
m
- Chain 'D':
Sequence, based on SEQRES records: (download)
>5w5dD (D:)
marenemdenleqvsgiignlrhmaldmgneidtqnrqidrimekadsnktrideanqra
tkmlg
Sequence, based on observed residues (ATOM records): (download)
>5w5dD (D:)
renemdenleqvsgiignlrhmaldmgneidtqnrqidrimekadsnktridea
- Chain 'E':
No sequence available.
- Chain 'F':
Sequence; same for both SEQRES and ATOM records: (download)
>5w5dF (F:)
qeklgdicfslryvptagkltvvileaknlkkmdvgglsdpyvkihlmqngkrlkkkktt
ikkntlnpyynesfsfevpfeqiqkvqvvvtvldydkigkndaigkvfvgynstgaelrh
wsdmlanprrpiaqwhtlqveeevdamlavkk