PDB entry 5w3e
View 5w3e on RCSB PDB site
Description: CryoEM structure of rhinovirus B14 in complex with C5 Fab (33 degrees Celsius, molar ratio 1:3, full particle)
Class: virus/immune system
Keywords: virus, antibody, VIRUS-IMMUNE SYSTEM complex
Deposited on
2017-06-07, released
2017-07-12
The last revision prior to the SCOPe 2.07 freeze date was dated
2017-08-09, with a file datestamp of
2017-08-04.
Experiment type: EM
Resolution: 2.53 Å
R-factor: N/A
AEROSPACI score: 0.21
(click here for full SPACI score report)
Chains and heterogens:
- Chain 'A':
Compound: viral protein 1
Species: Human rhinovirus 14 [TaxId:12131]
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.07: d5w3ea_ - Chain 'B':
Compound: viral protein 3
Species: Human rhinovirus 14 [TaxId:12131]
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.07: d5w3eb_ - Chain 'C':
Compound: viral protein 2
Species: Human rhinovirus 14 [TaxId:12131]
Database cross-references and differences (RAF-indexed):
- Chain 'D':
Compound: viral protein 4
Species: Human rhinovirus 14 [TaxId:12131]
Database cross-references and differences (RAF-indexed):
- Chain 'E':
Compound: C5 antibody variable heavy domain
Species: Mus musculus [TaxId:10090]
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.07: d5w3ee_ - Chain 'G':
Compound: C5 antibody variable light domain
Species: Mus musculus [TaxId:10090]
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.07: d5w3eg_ - Heterogens: HOH
PDB Chain Sequences:
- Chain 'A':
Sequence, based on SEQRES records: (download)
>5w3eA (A:)
glgdeleevivektkqtvasissgpkhtqkvpiltanetgatmpvlpsdsietrttymhf
ngsetdvecflgraacvhvteiqnkdatgidnhreaklfndwkinlsslvqlrkklelft
yvrfdseytilatasqpdsanyssnlvvqamyvppgapnpkewddytwqsasnpsvffkv
gdtsrfsvpyvglasayncfydgyshddaetqygitvlnhmgsmafrivnehdehktlvk
irvyhrakhveawiprapralpytsigrtnypkntepvikkrkgdiksy
Sequence, based on observed residues (ATOM records): (download)
>5w3eA (A:)
qtvasissgpkhtqkvpiltanetgatmpvlpsdsietrttymhfngsetdvecflgraa
cvhvteiqnkdatgidnhreaklfndwkinlsslvqlrkklelftyvrfdseytilatas
qpdsanyssnlvvqamyvppgapnpkewddytwqsasnpsvffkvgdtsrfsvpyvglas
ayncfydgyshddaetqygitvlnhmgsmafrivnehdehktlvkirvyhrakhveawip
rapralpytsigrtnypkntepvikkrkgdiksy
- Chain 'B':
Sequence; same for both SEQRES and ATOM records: (download)
>5w3eB (B:)
glptttlpgsgqflttddrqspsalpnyeptprihipgkvhnlleiiqvdtlipmnntht
kdevnsyliplnanrqneqvfgtnlfigdgvfkttllgeivqyythwsgslrfslmytgp
alssaklilaytppgargpqdrreamlgthvvwdiglqstivmtipwtsgvqfrytdpdt
ytsagflscwyqtslilppettgqvyllsfisacpdfklrlmkdtqtisqtvalte
- Chain 'C':
No sequence available.
- Chain 'D':
No sequence available.
- Chain 'E':
Sequence; same for both SEQRES and ATOM records: (download)
>5w3eE (E:)
avqlaesgpalvapsqalsitctvagfsltaygvawvrqppgaglewlgaiwaagatdyn
aalksrasiakdnsksqvflamaslatadtaayycarewdaygdywgqgttvtvsa
- Chain 'G':
Sequence; same for both SEQRES and ATOM records: (download)
>5w3eG (G:)
divltqspaalsaaagatvaatcrasgnihnalawyqqkagkspqllvyaaaalaagvps
rfsgsgsgtayalainslaaddfgayycqhfwstpytfgggtkleik