PDB entry 5vxt

View 5vxt on RCSB PDB site
Description: Crystal structure of catechol 1,2-dioxygenase from Burkholderia ambifaria
Class: oxidoreductase
Keywords: SSGCID, Burkholderia ambifaria, catechol 1, 2-dioxygenase, catechol, Structural Genomics, Seattle Structural Genomics Center for Infectious Disease, OXIDOREDUCTASE
Deposited on 2017-05-24, released 2017-06-14
The last revision prior to the SCOPe 2.07 freeze date was dated 2017-06-14, with a file datestamp of 2017-06-09.
Experiment type: XRAY
Resolution: 1.75 Å
R-factor: N/A
AEROSPACI score: 0.38 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: catechol 1,2-dioxygenase
    Species: Burkholderia ambifaria (strain MC40-6) [TaxId:398577]
    Gene: BamMC406_6300
    Database cross-references and differences (RAF-indexed):
    • Uniprot B1Z4S0 (8-End)
      • expression tag (4-7)
    Domains in SCOPe 2.07: d5vxta1, d5vxta2
  • Chain 'B':
    Compound: catechol 1,2-dioxygenase
    Species: Burkholderia ambifaria (strain MC40-6) [TaxId:398577]
    Gene: BamMC406_6300
    Database cross-references and differences (RAF-indexed):
    • Uniprot B1Z4S0 (8-End)
      • expression tag (4-7)
    Domains in SCOPe 2.07: d5vxtb1, d5vxtb2
  • Heterogens: PTY, FE, CAQ, EDO, CL, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >5vxtA (A:)
mahhhhhhmsvkvfdtkevqdllkaasnagtngangtqagnartqqivhrllgdlfkaid
dlditpdevwagvnylnklgqdgeaallaaglglekyldirmdaedeaigldggtprtie
gplyvagapvrdgvakidldadegagplvihgtvtgldgkpvagalvecwhanshgfysh
fdptgkqsdfnlrgavktgadgkyefrtlmpvgygcppqgatqqlldrlgrhgnrpahvh
ffvtsdghrklttqfniegdpliwddfayatreelippvtakaggaalglkadayqdief
nfvltprvegkdnqiverlrasata

    Sequence, based on observed residues (ATOM records): (download) 
    >5vxtA (A:)
hhhhmsvkvfdtkevqdllkaasnagagnartqqivhrllgdlfkaiddlditpdevwag
vnylnklgqdgeaallaaglglekyldirmdaedeaigldggtprtiegplyvagapvrd
gvakidldadegagplvihgtvtgldgkpvagalvecwhanshgfyshfdptgkqsdfnl
rgavktgadgkyefrtlmpvgygcppqgatqqlldrlgrhgnrpahvhffvtsdghrklt
tqfniegdpliwddfayatreelippvtakaggaalglkadayqdiefnfvltprvegkd
nqiverlrasa

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >5vxtB (B:)
mahhhhhhmsvkvfdtkevqdllkaasnagtngangtqagnartqqivhrllgdlfkaid
dlditpdevwagvnylnklgqdgeaallaaglglekyldirmdaedeaigldggtprtie
gplyvagapvrdgvakidldadegagplvihgtvtgldgkpvagalvecwhanshgfysh
fdptgkqsdfnlrgavktgadgkyefrtlmpvgygcppqgatqqlldrlgrhgnrpahvh
ffvtsdghrklttqfniegdpliwddfayatreelippvtakaggaalglkadayqdief
nfvltprvegkdnqiverlrasata

    Sequence, based on observed residues (ATOM records): (download) 
    >5vxtB (B:)
hhhhmsvkvfdtkevqdllkaasnagagnartqqivhrllgdlfkaiddlditpdevwag
vnylnklgqdgeaallaaglglekyldirmdaedeaigldggtprtiegplyvagapvrd
gvakidldadegagplvihgtvtgldgkpvagalvecwhanshgfyshfdptgkqsdfnl
rgavktgadgkyefrtlmpvgygcppqgatqqlldrlgrhgnrpahvhffvtsdghrklt
tqfniegdpliwddfayatreelippvtakaggaalglkadayqdiefnfvltprvegkd
nqiverlrasat