PDB entry 5vt8

View 5vt8 on RCSB PDB site
Description: Crystal Structure of Mouse Cadherin-23 EC24-25
Class: cell adhesion
Keywords: hearing, mechanotransduction, adhesion, calcium-binding protein, cell adhesion
Deposited on 2017-05-15, released 2018-05-23
The last revision prior to the SCOPe 2.08 freeze date was dated 2018-09-19, with a file datestamp of 2018-09-14.
Experiment type: XRAY
Resolution: 2.92 Å
R-factor: N/A
AEROSPACI score: 0.14 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: cadherin-23
    Species: Mus musculus [TaxId:10090]
    Gene: Cdh23
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d5vt8a1, d5vt8a2
  • Chain 'B':
    Compound: cadherin-23
    Species: Mus musculus [TaxId:10090]
    Gene: Cdh23
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d5vt8b1, d5vt8b2
  • Chain 'C':
    Compound: cadherin-23
    Species: Mus musculus [TaxId:10090]
    Gene: Cdh23
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d5vt8c1, d5vt8c2
  • Chain 'D':
    Compound: cadherin-23
    Species: Mus musculus [TaxId:10090]
    Gene: Cdh23
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d5vt8d1, d5vt8d2
  • Heterogens: CA

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >5vt8A (A:)
mdcrpqfskpqfstsvyenepagtsvitmlatdqdegsnsqltyslegpgmeafsvdmds
glvttqrplqsyerfnltvvatdggepplwgttmllvevidvndnrpvfvrppngtilhi
keeiplrsnvyevyatdndeglngavrysflkttgnrdweyftidpisgliqtaqrldre
kqavyslilvasdlgqpvpyetmqplqvaledilehhhhhh

    Sequence, based on observed residues (ATOM records): (download) 
    >5vt8A (A:)
dcrpqfskpqfstsvyenepagtsvitmlatdqdsqltyslegpgmeafsvdmdsglvtt
qrplqsyerfnltvvatdggepplwgttmllvevidvndnrpvfvrppngtilhikeeip
lrsnvyevyatdndeglngavrysflkttgnrdweyftidpisgliqtaqrldrekqavy
slilvasdlgqpvpyetmqplqvaledi

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >5vt8B (B:)
mdcrpqfskpqfstsvyenepagtsvitmlatdqdegsnsqltyslegpgmeafsvdmds
glvttqrplqsyerfnltvvatdggepplwgttmllvevidvndnrpvfvrppngtilhi
keeiplrsnvyevyatdndeglngavrysflkttgnrdweyftidpisgliqtaqrldre
kqavyslilvasdlgqpvpyetmqplqvaledilehhhhhh

    Sequence, based on observed residues (ATOM records): (download) 
    >5vt8B (B:)
dcrpqfskpqfstsvyenepagtsvitmlatdqsqltyslegpgmeafsvdmdsglvttq
rplqsyerfnltvvatdggepplwgttmllvevidvndnrpvfvrppngtilhikeeipl
rsnvyevyatdndeglngavrysflkttgnrdweyftidpisgliqtaqrldrekqavys
lilvasdlgqpvpyetmqplqvaledi

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >5vt8C (C:)
mdcrpqfskpqfstsvyenepagtsvitmlatdqdegsnsqltyslegpgmeafsvdmds
glvttqrplqsyerfnltvvatdggepplwgttmllvevidvndnrpvfvrppngtilhi
keeiplrsnvyevyatdndeglngavrysflkttgnrdweyftidpisgliqtaqrldre
kqavyslilvasdlgqpvpyetmqplqvaledilehhhhhh

    Sequence, based on observed residues (ATOM records): (download) 
    >5vt8C (C:)
dcrpqfskpqfstsvyenepagtsvitmlatdqdegsnsqltyslegpgmeafsvdmdsg
lvttqrplqsyerfnltvvatdggepplwgttmllvevidvndnrpvfvrppngtilhik
eeiprsnvyevyatdndeglngavrysflkttgnrdweyftidpisgliqtaqrldrekq
avyslilvasdlgqpvpyetmqplqvaledi

  • Chain 'D':
    Sequence, based on SEQRES records: (download) 
    >5vt8D (D:)
mdcrpqfskpqfstsvyenepagtsvitmlatdqdegsnsqltyslegpgmeafsvdmds
glvttqrplqsyerfnltvvatdggepplwgttmllvevidvndnrpvfvrppngtilhi
keeiplrsnvyevyatdndeglngavrysflkttgnrdweyftidpisgliqtaqrldre
kqavyslilvasdlgqpvpyetmqplqvaledilehhhhhh

    Sequence, based on observed residues (ATOM records): (download) 
    >5vt8D (D:)
dcrpqfskpqfstsvyenepagtsvitmlatdqsqltyslegpgmeafsvdmdsglvttq
rplqsyerfnltvvatdggepplwgttmllvevidvndnrpvfvrppngtilhikeeipl
rsnvyevyatdndeglngavrysflkttgnrdweyftidpisgliqtaqvyslilvasdl
gqpvpyetmqplqva