PDB entry 5vpw

View 5vpw on RCSB PDB site
Description: Nitrogenase Cp1 at pH 5
Class: oxidoreductase
Keywords: Nitrogenase, Molybdenum-iron protein, MoFe protein, Cp1, OXIDOREDUCTASE
Deposited on 2017-05-05, released 2017-07-26
The last revision prior to the SCOPe 2.06 freeze date was dated 2017-07-26, with a file datestamp of 2017-07-21.
Experiment type: XRAY
Resolution: 1.85 Å
R-factor: N/A
AEROSPACI score: 0.35 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: nitrogenase molybdenum-iron protein alpha chain
    Species: Clostridium pasteurianum [TaxId:1501]
    Gene: nifD
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.06: d5vpwa_
  • Chain 'B':
    Compound: nitrogenase molybdenum-iron protein beta chain
    Species: Clostridium pasteurianum [TaxId:1501]
    Gene: nifK
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.06: d5vpwb_
  • Chain 'C':
    Compound: nitrogenase molybdenum-iron protein alpha chain
    Species: Clostridium pasteurianum [TaxId:1501]
    Gene: nifD
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.06: d5vpwc_
  • Chain 'D':
    Compound: nitrogenase molybdenum-iron protein beta chain
    Species: Clostridium pasteurianum [TaxId:1501]
    Gene: nifK
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.06: d5vpwd_
  • Heterogens: HCA, ICS, CLF, FE2, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >5vpwA (A:)
msenlkdeilekyipktkktrsghivikteetpnpeivantrtvpgiitargcayagckg
vvmgpikdmvhithgpigcsfytwggrrfkskpengtglnfneyvfstdmqesdivfggv
nklkdaiheayemfhpaaigvyatcpvgligddilavaataskeigipvhafscegykgv
sqsaghhianntvmtdiigkgnkeqkkysinvlgeyniggdawemdrvlekigyhvnatl
tgdatyekvqnadkadlnlvqchrsinyiaemmetkygipwikcnfigvdgivetlrdma
kcfddpeltkrteeviaeeiaaiqddldyfkeklqgktaclyvggsrshtymnmlksfgv
dslvagfefahrddyegreviptikidadsknipeitvtpdeqkyrvvipedkveelkka
gvplssyggmmkemhdgtiliddmnhhdmevvleklkpdmffagikekfviqkggvlskq
lhsydyngpyagfrgvvnfghelvngiytpawkmitppwk

    Sequence, based on observed residues (ATOM records): (download) 
    >5vpwA (A:)
nlkdeilekyipktkktrsghivikteetpnpeivantrtvpgiitargcayagckgvvm
gpikdmvhithgpigcsfytwggrrfkskpengtglnfneyvfstdmqesdivfggvnkl
kdaiheayemfhpaaigvyatcpvgligddilavaataskeigipvhafscegykgvsqs
aghhianntvmtdiigkgnkeqkkysinvlgeyniggdawemdrvlekigyhvnatltgd
atyekvqnadkadlnlvqchrsinyiaemmetkygipwikcnfigvdgivetlrdmakcf
ddpeltkrteeviaeeiaaiqddldyfkeklqgktaclyvggsrshtymnmlksfgvdsl
vagfefahrddyegreviptikidadsknipeitvtpdeqkyrvvipedkveelkkagvp
lssyggmmkemhdgtiliddmnhhdmevvleklkpdmffagikekfviqkggvlskqlhs
ydyngpyagfrgvvnfghelvngiytpawkmitppwk

  • Chain 'B':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >5vpwB (B:)
mldatpkeiverkalrinpaktcqpvgamyaalgihnclphshgsqgccsyhrtvlsrhf
kepamastssftegasvfgggsniktavknifslynpdiiavhttclsetlgddlptyis
qmedagsipegklvihtntpsyvgshvtgfanmvqgivnylsentgakngkinvipgfvg
padmreikrlfeamdipyimfpdtsgvldgpttgeykmypeggtkiedlkdtgnsdltls
lgsyasdlgaktlekkckvpfktlrtpigvsatdefimalseatgkevpasieeergqli
dlmidaqqylqgkkvallgdpdeiialskfiielgaipkyvvtgtpgmkfqkeidamlae
agiegskvkvegdffdvhqwiknegvdllisntygkfiareenipfvrfgfpimdryghy
ynpkvgykgairlveeitnvildkierecteedfevvr

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >5vpwC (C:)
msenlkdeilekyipktkktrsghivikteetpnpeivantrtvpgiitargcayagckg
vvmgpikdmvhithgpigcsfytwggrrfkskpengtglnfneyvfstdmqesdivfggv
nklkdaiheayemfhpaaigvyatcpvgligddilavaataskeigipvhafscegykgv
sqsaghhianntvmtdiigkgnkeqkkysinvlgeyniggdawemdrvlekigyhvnatl
tgdatyekvqnadkadlnlvqchrsinyiaemmetkygipwikcnfigvdgivetlrdma
kcfddpeltkrteeviaeeiaaiqddldyfkeklqgktaclyvggsrshtymnmlksfgv
dslvagfefahrddyegreviptikidadsknipeitvtpdeqkyrvvipedkveelkka
gvplssyggmmkemhdgtiliddmnhhdmevvleklkpdmffagikekfviqkggvlskq
lhsydyngpyagfrgvvnfghelvngiytpawkmitppwk

    Sequence, based on observed residues (ATOM records): (download) 
    >5vpwC (C:)
nlkdeilekyipktkktrsghivikteetpnpeivantrtvpgiitargcayagckgvvm
gpikdmvhithgpigcsfytwggrrfkskpengtglnfneyvfstdmqesdivfggvnkl
kdaiheayemfhpaaigvyatcpvgligddilavaataskeigipvhafscegykgvsqs
aghhianntvmtdiigkgnkeqkkysinvlgeyniggdawemdrvlekigyhvnatltgd
atyekvqnadkadlnlvqchrsinyiaemmetkygipwikcnfigvdgivetlrdmakcf
ddpeltkrteeviaeeiaaiqddldyfkeklqgktaclyvggsrshtymnmlksfgvdsl
vagfefahpeitvtpdeqkyrvvipedkveelkkagvplssyggmmkemhdgtiliddmn
hhdmevvleklkpdmffagikekfviqkggvlskqlhsydyngpyagfrgvvnfghelvn
giytpawkmitppwk

  • Chain 'D':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >5vpwD (D:)
mldatpkeiverkalrinpaktcqpvgamyaalgihnclphshgsqgccsyhrtvlsrhf
kepamastssftegasvfgggsniktavknifslynpdiiavhttclsetlgddlptyis
qmedagsipegklvihtntpsyvgshvtgfanmvqgivnylsentgakngkinvipgfvg
padmreikrlfeamdipyimfpdtsgvldgpttgeykmypeggtkiedlkdtgnsdltls
lgsyasdlgaktlekkckvpfktlrtpigvsatdefimalseatgkevpasieeergqli
dlmidaqqylqgkkvallgdpdeiialskfiielgaipkyvvtgtpgmkfqkeidamlae
agiegskvkvegdffdvhqwiknegvdllisntygkfiareenipfvrfgfpimdryghy
ynpkvgykgairlveeitnvildkierecteedfevvr