PDB entry 5vpq

View 5vpq on RCSB PDB site
Description: Crystal structure of beta-lactamase from Burkholderia phymatum
Class: hydrolase
Keywords: SSGCID, beta-lactamase, Burkholderia phymatum, Structural Genomics, Seattle Structural Genomics Center for Infectious Disease, HYDROLASE
Deposited on 2017-05-05, released 2017-05-17
The last revision prior to the SCOPe 2.06 freeze date was dated 2017-05-17, with a file datestamp of 2017-05-12.
Experiment type: XRAY
Resolution: 1.4 Å
R-factor: N/A
AEROSPACI score: 0.53 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Beta-lactamase
    Species: Paraburkholderia phymatum (strain DSM 17167 / CIP 108236 / LMG 21445 / STM815) [TaxId:391038]
    Gene: Bphy_2229
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.06: d5vpqa_
  • Chain 'B':
    Compound: Beta-lactamase
    Species: Paraburkholderia phymatum (strain DSM 17167 / CIP 108236 / LMG 21445 / STM815) [TaxId:391038]
    Gene: Bphy_2229
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.06: d5vpqb_
  • Heterogens: EDO, PO4, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >5vpqA (A:)
mahhhhhhmigvraqpassvsinlaarerfeqleassggrlgvaalrtadgsyvgyrese
rfpmcstfkllavalilkrsmaerglleerirygdaqvvahspvtkrhaggegmtvgels
aaalqhsdntaanllltslggpevlnqfalsigdtwfdlvrnepevnasvpgdmrdttsp
ramlldvqkllladdvlgarereqlkawmlgnttgatriraavpaagwlvadntgsgdyg
tandvavvyppssaplvvaiyftgvtpketppqdaivdeaarivfdalr

    Sequence, based on observed residues (ATOM records): (download) 
    >5vpqA (A:)
raqpassvsinlaarerfeqleassggrlgvaalrtadgsyvgyreserfpmcstfklla
valilkrsmaerglleerirygdaqvvahspvtkrhaggegmtvgelsaaalqhsdntaa
nllltslggpevlnqfalsigdtwfdlvrnepevnasvpgdmrdttspramlldvqklll
addvlgarereqlkawmlgnttgatriraavpaagwlvadntgsgdygtandvavvypps
saplvvaiyftgvtpketppqdaivdeaarivfdalr

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >5vpqB (B:)
mahhhhhhmigvraqpassvsinlaarerfeqleassggrlgvaalrtadgsyvgyrese
rfpmcstfkllavalilkrsmaerglleerirygdaqvvahspvtkrhaggegmtvgels
aaalqhsdntaanllltslggpevlnqfalsigdtwfdlvrnepevnasvpgdmrdttsp
ramlldvqkllladdvlgarereqlkawmlgnttgatriraavpaagwlvadntgsgdyg
tandvavvyppssaplvvaiyftgvtpketppqdaivdeaarivfdalr

    Sequence, based on observed residues (ATOM records): (download) 
    >5vpqB (B:)
vsinlaarerfeqleassggrlgvaalrtadgsyvgyreserfpmcstfkllavalilkr
smaerglleerirygdaqvvahspvtkrhaggegmtvgelsaaalqhsdntaanllltsl
ggpevlnqfalsigdtwfdlvrnepevnasvpgdmrdttspramlldvqkllladdvlga
rereqlkawmlgnttgatriraavpaagwlvadntgsgdygtandvavvyppssaplvva
iyftgvtpketppqdaivdeaarivfdalr