PDB entry 5vmg

View 5vmg on RCSB PDB site
Description: Influenza hemagglutinin H1 mutant DH1E in complex with 6'SLN
Class: viral protein
Keywords: influenza, hemagglutinin, receptor, VIRAL PROTEIN
Deposited on 2017-04-27, released 2017-11-08
The last revision prior to the SCOPe 2.07 freeze date was dated 2017-11-08, with a file datestamp of 2017-11-03.
Experiment type: XRAY
Resolution: 2.45 Å
R-factor: N/A
AEROSPACI score: 0.22 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: hemagglutinin HA1
    Species: Influenza A virus (A/New_York/1/18(H1N1)) [TaxId:88775]
    Gene: HA
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q9WFX4 (0-End)
      • engineered mutation (185)
      • engineered mutation (221)
      • engineered mutation (223)
    Domains in SCOPe 2.07: d5vmga_
  • Chain 'B':
    Compound: hemagglutinin HA2
    Species: Influenza A virus (strain A/Brevig Mission/1/1918 H1N1) [TaxId:88776]
    Gene: HA
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d5vmgb_
  • Chain 'C':
    Compound: hemagglutinin HA1
    Species: Influenza A virus (A/New_York/1/18(H1N1)) [TaxId:88775]
    Gene: HA
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q9WFX4 (0-End)
      • engineered mutation (185)
      • engineered mutation (221)
      • engineered mutation (223)
    Domains in SCOPe 2.07: d5vmgc_
  • Chain 'D':
    Compound: hemagglutinin HA2
    Species: Influenza A virus (strain A/Brevig Mission/1/1918 H1N1) [TaxId:88776]
    Gene: HA
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d5vmgd_
  • Chain 'E':
    Compound: hemagglutinin HA1
    Species: Influenza A virus (A/New_York/1/18(H1N1)) [TaxId:88775]
    Gene: HA
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q9WFX4 (0-End)
      • engineered mutation (185)
      • engineered mutation (221)
      • engineered mutation (223)
    Domains in SCOPe 2.07: d5vmge_
  • Chain 'F':
    Compound: hemagglutinin HA2
    Species: Influenza A virus (strain A/Brevig Mission/1/1918 H1N1) [TaxId:88776]
    Gene: HA
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d5vmgf_
  • Heterogens: NAG, BMA, SIA, GAL, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >5vmgA (A:)
dticigyhannstdtvdtvleknvtvthsvnlledshngklcklkgiaplqlgkcniagw
llgnpecdllltasswsyivetsnsengtcypgdfidyeelreqlssvssfekfeifpkt
sswpnhettgvtaacsyagassfyrnllwltkkgssypklsksyvnnkgkevlvlwgvhh
pptgteqqslyqnadayvsvgsskynrrftpeiaarpkvrglasrmnyywtllepgdtit
featgnliapwyafalnrgsgsgiitsdapvhdcntkcqtphgainsslpfqnihpvtig
ecpkyvrstklrmatglrnipsiqsr

    Sequence, based on observed residues (ATOM records): (download) 
    >5vmgA (A:)
dticigyhannstdtvdtvleknvtvthsvnlledshngklcklkgiaplqlgkcniagw
llgnpecdllltasswsyivetsnsengtcypgdfidyeelreqlssvssfekfeifpkt
sswpnhettgvtaacsyagassfyrnllwltkkgssypklsksyvnnkgkevlvlwgvhh
pptgteqqslyqnadayvsvgsskynrrftpeiaarpkvrglasrmnyywtllepgdtit
featgnliapwyafalnrgsgsgiitsdapvhdcntkcqtphgainsslpfqnihpvtig
ecpkyvrstklrmatglrnip

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >5vmgB (B:)
glfgaiagfieggwtgmidgwygyhhqneqgsgyaadqkstqnaidgitnkvnsviekmn
tqftavgkefnnlerrienlnkkvddgfldiwtynaellvllenertldfhdsnvrnlye
kvksqlknnakeigngcfefyhkcddacmesvrngtydypkyseesklnreeidgvkles
mgvyqgalvpr

    Sequence, based on observed residues (ATOM records): (download) 
    >5vmgB (B:)
glfgaiagfieggwtgmidgwygyhhqneqgsgyaadqkstqnaidgitnkvnsviekmn
tqftavgkefnnlerrienlnkkvddgfldiwtynaellvllenertldfhdsnvrnlye
kvksqlknnakeigngcfefyhkcddacmesvrngtydypkyse

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >5vmgC (C:)
dticigyhannstdtvdtvleknvtvthsvnlledshngklcklkgiaplqlgkcniagw
llgnpecdllltasswsyivetsnsengtcypgdfidyeelreqlssvssfekfeifpkt
sswpnhettgvtaacsyagassfyrnllwltkkgssypklsksyvnnkgkevlvlwgvhh
pptgteqqslyqnadayvsvgsskynrrftpeiaarpkvrglasrmnyywtllepgdtit
featgnliapwyafalnrgsgsgiitsdapvhdcntkcqtphgainsslpfqnihpvtig
ecpkyvrstklrmatglrnipsiqsr

    Sequence, based on observed residues (ATOM records): (download) 
    >5vmgC (C:)
dticigyhannstdtvdtvleknvtvthsvnlledshngklcklkgiaplqlgkcniagw
llgnpecdllltasswsyivetsnsengtcypgdfidyeelreqlssvssfekfeifpkt
sswpnhettgvtaacsyagassfyrnllwltkkgssypklsksyvnnkgkevlvlwgvhh
pptgteqqslyqnadayvsvgsskynrrftpeiaarpkvrglasrmnyywtllepgdtit
featgnliapwyafalnrgsgsgiitsdapvhdcntkcqtphgainsslpfqnihpvtig
ecpkyvrstklrmatglrnip

  • Chain 'D':
    Sequence, based on SEQRES records: (download) 
    >5vmgD (D:)
glfgaiagfieggwtgmidgwygyhhqneqgsgyaadqkstqnaidgitnkvnsviekmn
tqftavgkefnnlerrienlnkkvddgfldiwtynaellvllenertldfhdsnvrnlye
kvksqlknnakeigngcfefyhkcddacmesvrngtydypkyseesklnreeidgvkles
mgvyqgalvpr

    Sequence, based on observed residues (ATOM records): (download) 
    >5vmgD (D:)
glfgaiagfieggwtgmidgwygyhhqneqgsgyaadqkstqnaidgitnkvnsviekmn
tqftavgkefnnlerrienlnkkvddgfldiwtynaellvllenertldfhdsnvrnlye
kvksqlknnakeigngcfefyhkcddacmesvrngtydypkyse

  • Chain 'E':
    Sequence, based on SEQRES records: (download) 
    >5vmgE (E:)
dticigyhannstdtvdtvleknvtvthsvnlledshngklcklkgiaplqlgkcniagw
llgnpecdllltasswsyivetsnsengtcypgdfidyeelreqlssvssfekfeifpkt
sswpnhettgvtaacsyagassfyrnllwltkkgssypklsksyvnnkgkevlvlwgvhh
pptgteqqslyqnadayvsvgsskynrrftpeiaarpkvrglasrmnyywtllepgdtit
featgnliapwyafalnrgsgsgiitsdapvhdcntkcqtphgainsslpfqnihpvtig
ecpkyvrstklrmatglrnipsiqsr

    Sequence, based on observed residues (ATOM records): (download) 
    >5vmgE (E:)
dticigyhannstdtvdtvleknvtvthsvnlledshngklcklkgiaplqlgkcniagw
llgnpecdllltasswsyivetsnsengtcypgdfidyeelreqlssvssfekfeifpkt
sswpnhettgvtaacsyagassfyrnllwltkkgssypklsksyvnnkgkevlvlwgvhh
pptgteqqslyqnadayvsvgsskynrrftpeiaarpkvrglasrmnyywtllepgdtit
featgnliapwyafalnrgsgsgiitsdapvhdcntkcqtphgainsslpfqnihpvtig
ecpkyvrstklrmatglrnip

  • Chain 'F':
    Sequence, based on SEQRES records: (download) 
    >5vmgF (F:)
glfgaiagfieggwtgmidgwygyhhqneqgsgyaadqkstqnaidgitnkvnsviekmn
tqftavgkefnnlerrienlnkkvddgfldiwtynaellvllenertldfhdsnvrnlye
kvksqlknnakeigngcfefyhkcddacmesvrngtydypkyseesklnreeidgvkles
mgvyqgalvpr

    Sequence, based on observed residues (ATOM records): (download) 
    >5vmgF (F:)
glfgaiagfieggwtgmidgwygyhhqneqgsgyaadqkstqnaidgitnkvnsviekmn
tqftavgkefnnlerrienlnkkvddgfldiwtynaellvllenertldfhdsnvrnlye
kvksqlknnakeigngcfefyhkcddacmesvrngtydypkyse