PDB entry 5vki
View 5vki on RCSB PDB site
Description: Crystal structure of P[19] rotavirus VP8* complexed with mucin core 2
Class: viral protein
Keywords: complex, P[19]VP8*, mucin core 2, VIRAL PROTEIN
Deposited on
2017-04-21, released
2017-11-08
The last revision prior to the SCOPe 2.06 freeze date was dated
2017-11-08, with a file datestamp of
2017-11-03.
Experiment type: XRAY
Resolution: 1.9 Å
R-factor: N/A
AEROSPACI score: 0.33
(click here for full SPACI score report)
Chains and heterogens:
- Chain 'A':
Compound: Outer capsid protein VP4
Species: Human rotavirus A [TaxId:10941]
Gene: VP4
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.06: d5vkia_ - Chain 'B':
Compound: Outer capsid protein VP4
Species: Human rotavirus A [TaxId:10941]
Gene: VP4
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.06: d5vkib_ - Heterogens: SO4, GOL, THR, NGA, GAL, NAG, HOH
PDB Chain Sequences:
- Chain 'A':
Sequence; same for both SEQRES and ATOM records: (download)
>5vkiA (A:)
vldgpyqpvtfkppndywilinsnsngvvlegtnntdvwvaiisiepnvnsesrqyslfg
vnkqitvvntsnkwkfmemfrnnsnaefqhkrtltsstklvgilkhggrlwtyhgetpna
ttdysttsnlneisvttyaefyiiprsqeskcteyintgl
- Chain 'B':
Sequence; same for both SEQRES and ATOM records: (download)
>5vkiB (B:)
vldgpyqpvtfkppndywilinsnsngvvlegtnntdvwvaiisiepnvnsesrqyslfg
vnkqitvvntsnkwkfmemfrnnsnaefqhkrtltsstklvgilkhggrlwtyhgetpna
ttdysttsnlneisvttyaefyiiprsqeskcteyintgl