PDB entry 5vk4

View 5vk4 on RCSB PDB site
Description: Crystal structure of a phosphoribosylformylglycinamidine cyclo-ligase from Neisseria gonorrhoeae bound to AMPPNP and magnesium
Class: ligase
Keywords: structural genomics, ATP-dependent, non-hydrolyzable substrate analog, purM, Seattle Structural Genomics Center for Infectious Disease, SSGCID, LIGASE
Deposited on 2017-04-20, released 2017-05-10
The last revision prior to the SCOPe 2.06 freeze date was dated 2017-05-10, with a file datestamp of 2017-05-05.
Experiment type: XRAY
Resolution: 2.65 Å
R-factor: N/A
AEROSPACI score: 0.18 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: phosphoribosylformylglycinamidine cyclo-ligase
    Species: NEISSERIA GONORRHOEAE [TaxId:485]
    Gene: purM, WHOG_01214C, WHOG_02062, WHON_01216C, WHON_01605, WHOO_01146C, WHOO_02090
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.06: d5vk4a1, d5vk4a2
  • Chain 'B':
    Compound: phosphoribosylformylglycinamidine cyclo-ligase
    Species: NEISSERIA GONORRHOEAE [TaxId:485]
    Gene: purM, WHOG_01214C, WHOG_02062, WHON_01216C, WHON_01605, WHOO_01146C, WHOO_02090
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.06: d5vk4b1, d5vk4b2
  • Heterogens: ANP, MG, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >5vk4A (A:)
mahhhhhhmstslsyrdagvgidagdqlvekikpfakrtmrpevlgdlggfgalveigkk
yqnpvlvsgtdgvgtklklafdwdkhdtvgidlvamsvndilvqgaeplffldyfacgkl
dvpratdvikgiaqgceesgcaliggetaempgmypvgeydlagfavgvvekenvitgls
vgagdmvlglasngahsngyslirkiierdnpdldaefdngktlreaviaptrlyvkpil
aalekftikgmahitgggitenvprvlpkntvaqidaeswelpklfqwlqkagnvetqem
yrtfncgigmvvivaaedadavrsflsgqgetvyrlgcirerqgnehqtqva

    Sequence, based on observed residues (ATOM records): (download) 
    >5vk4A (A:)
dagdqlvekikpfakrtmrpevlgalveigkkyqnpvlvsgtdgvgtklklafdwdkhdt
vgidlvamsvndilvqgaeplffldyfacgkldvpratdvikgiaqgceesgcaligget
aempgmypvgeydlagfavgvvekenvitglsvgagdmvlglasngahsngyslirkiie
rdnpdldaefdngktlreaviaptrlyvkpilaalekftikgmahitgggitenvprvlp
kntvaqidaeswelpklfqwlqkagnvetqemyrtfncgigmvvivaaedadavrsflsg
qgetvyrlgcirerqgnehqtqva

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >5vk4B (B:)
mahhhhhhmstslsyrdagvgidagdqlvekikpfakrtmrpevlgdlggfgalveigkk
yqnpvlvsgtdgvgtklklafdwdkhdtvgidlvamsvndilvqgaeplffldyfacgkl
dvpratdvikgiaqgceesgcaliggetaempgmypvgeydlagfavgvvekenvitgls
vgagdmvlglasngahsngyslirkiierdnpdldaefdngktlreaviaptrlyvkpil
aalekftikgmahitgggitenvprvlpkntvaqidaeswelpklfqwlqkagnvetqem
yrtfncgigmvvivaaedadavrsflsgqgetvyrlgcirerqgnehqtqva

    Sequence, based on observed residues (ATOM records): (download) 
    >5vk4B (B:)
dagdqlvekikpfakrtmrpevlgdlggfgalveigkkyqnpvlvsgtdgvgtklklafd
wdkhdtvgidlvamsvndilvqgaeplffldyfacgkldvpratdvikgiaqgceesgca
liggetaempgmypvgeydlagfavgvvekenvitglsvgagdmvlglasngahsngysl
irkiierdnpdldaefdngktlreaviaptrlyvkpilaalekftikgmahitgggiten
vprvlpkntvaqidaeswelpklfqwlqkagnvetqemyrtfncgigmvvivaaedadav
rsflsgqgetvyrlgcirerqgnehqtqva