PDB entry 5vjo

View 5vjo on RCSB PDB site
Description: Complex between HyHEL10 Fab fragment heavy chain mutant I29F and Pekin duck egg lysozyme isoform I (DEL-I)
Class: hydrolase/immune system
Keywords: lysozyme, hydrolase, HYDROLASE-IMMUNE SYSTEM complex
Deposited on 2017-04-19, released 2018-04-11
The last revision prior to the SCOPe 2.07 freeze date was dated 2018-04-11, with a file datestamp of 2018-04-06.
Experiment type: XRAY
Resolution: 2.43 Å
R-factor: N/A
AEROSPACI score: 0.22 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: HyHEL10 heavy chain Fab fragment carrying I29F mutation.
    Species: Mus musculus [TaxId:10090]
    Database cross-references and differences (RAF-indexed):
    • PDB 5VJO (0-End)
  • Chain 'B':
    Compound: HyHEL10 light chain Fab fragment
    Species: Mus musculus [TaxId:10090]
    Gene: IgG Light Chain
    Database cross-references and differences (RAF-indexed):
    • PDB 5VJO (0-210)
    Domains in SCOPe 2.07: d5vjob1, d5vjob2
  • Chain 'C':
    Compound: HyHEL10 heavy chain Fab fragment carrying I29F mutation.
    Species: Mus musculus [TaxId:10090]
    Database cross-references and differences (RAF-indexed):
    • PDB 5VJO (0-212)
  • Chain 'D':
    Compound: HyHEL10 light chain Fab fragment
    Species: Mus musculus [TaxId:10090]
    Gene: IgG Light Chain
    Database cross-references and differences (RAF-indexed):
    • PDB 5VJO (0-210)
  • Chain 'E':
    Compound: lysozyme isoform I (DEL-I)
    Species: Anas platyrhynchos [TaxId:8839]
    Database cross-references and differences (RAF-indexed):
    • Uniprot U3J0P1 (0-End)
      • conflict (36)
      • conflict (70)
    Domains in SCOPe 2.07: d5vjoe_
  • Chain 'F':
    Compound: lysozyme isoform I (DEL-I)
    Species: Anas platyrhynchos [TaxId:8839]
    Database cross-references and differences (RAF-indexed):
    • Uniprot U3J0P1 (0-128)
      • conflict (36)
      • conflict (70)
    Domains in SCOPe 2.07: d5vjof_
  • Heterogens: CL, NA, HOH

PDB Chain Sequences:

  • Chain 'A':
    No sequence available.

  • Chain 'B':
    Sequence; same for both SEQRES and ATOM records: (download)
    >5vjoB (B:)
    divltqspatlsvtpgnsvslscrasqsignnlhwyqqkshesprllikyasqsisgips
    rfsgsgsgtdftlsinsvetedfgmyfcqqsnswpytfgggtkleikradaaptvsifpp
    sseqltsggasvvcflnnfypkdinvkwkidgserqngvlnswtdqdskdstysmsstlt
    ltkdeyerhnsytceathktstspivksfnr
    

  • Chain 'C':
    No sequence available.

  • Chain 'D':
    No sequence available.

  • Chain 'E':
    Sequence, based on SEQRES records: (download)
    >5vjoE (E:)
    kvysrcelaaamkrlgldnyrgyslgnwvcaanyessfntqatnrntdgstdygilqins
    rwwcddgktpgsknacgipcsvllrsditeavrcakrivsdgngmnawvawrnrcrgtdv
    skwirgcrl
    

    Sequence, based on observed residues (ATOM records): (download)
    >5vjoE (E:)
    kvysrcelaaamkrlgldnyrgyslgnwvcaanyessfntqatnrntdgstdygilqins
    rwwcddgktpgsknacgipcsvllrsditeavrcakrivsdgngmnawvawrnrcrgtdv
    skwirgc
    

  • Chain 'F':
    Sequence; same for both SEQRES and ATOM records: (download)
    >5vjoF (F:)
    kvysrcelaaamkrlgldnyrgyslgnwvcaanyessfntqatnrntdgstdygilqins
    rwwcddgktpgsknacgipcsvllrsditeavrcakrivsdgngmnawvawrnrcrgtdv
    skwirgcrl