PDB entry 5vj0

View 5vj0 on RCSB PDB site
Description: Crystal Structure of heme-containing DyP Type Peroxidase from Enterobacter lignolyticus
Class: oxidoreductase
Keywords: Enterobacter lignolyticus, Peroxidase, Heme, Lignin, OXIDOREDUCTASE
Deposited on 2017-04-17, released 2017-08-16
The last revision prior to the SCOPe 2.08 freeze date was dated 2020-01-01, with a file datestamp of 2019-12-27.
Experiment type: XRAY
Resolution: 1.93 Å
R-factor: N/A
AEROSPACI score: 0.33 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Dyp-type peroxidase family
    Species: Enterobacter lignolyticus [TaxId:1334193]
    Gene: YfeX
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d5vj0a_
  • Chain 'B':
    Compound: Dyp-type peroxidase family
    Species: Enterobacter lignolyticus [TaxId:1334193]
    Gene: YfeX
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d5vj0b_
  • Chain 'C':
    Compound: Dyp-type peroxidase family
    Species: Enterobacter lignolyticus [TaxId:1334193]
    Gene: YfeX
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d5vj0c_
  • Chain 'D':
    Compound: Dyp-type peroxidase family
    Species: Enterobacter lignolyticus [TaxId:1334193]
    Gene: YfeX
    Database cross-references and differences (RAF-indexed):
    • Uniprot E3G9I4 (19-317)
      • expression tag (18)
    Domains in SCOPe 2.08: d5vj0d1, d5vj0d2
  • Heterogens: HEM, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >5vj0A (A:)
mhhhhhhssgrenlyfqghmsqvqsgilpehcraaiwieanvkgdvnalrecskvfadkl
agfeaqfpdahlgavvafghdtwralsggvgaeelkdftpygkglapatqydvlihilsl
rhdvnfsvaqaamaafgdavevkeeihgfrwveerdlsgfvdgtenpageetrrevavik
dgvdaggsyvfvqrwehnlkqlnrmsvhdqemmigrtkvaneeidgderpetshltrvdl
kengkglkivrqslpygtasgthglyfcaycarlynieqqllsmfgdtdgkrdamlrftk
pvtggyyfapsldkllal

    Sequence, based on observed residues (ATOM records): (download) 
    >5vj0A (A:)
sqvqsgilpehcraaiwieanvkgdvnalrecskvfadklagfeaqfpdahlgavvafgh
dtwralsggvgaeelkdftpygkglapatqydvlihilslrhdvnfsvaqaamaafgdav
evkeeihgfrwveerdlsgfvdgtenpageetrrevavikdgvdaggsyvfvqrwehnlk
qlnrmsvhdqemmigrtkvaneeidgderpetshltrvdlkengkglkivrqslpygtas
gthglyfcaycarlynieqqllsmfgdtdgkrdamlrftkpvtggyyfapsldkllal

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >5vj0B (B:)
mhhhhhhssgrenlyfqghmsqvqsgilpehcraaiwieanvkgdvnalrecskvfadkl
agfeaqfpdahlgavvafghdtwralsggvgaeelkdftpygkglapatqydvlihilsl
rhdvnfsvaqaamaafgdavevkeeihgfrwveerdlsgfvdgtenpageetrrevavik
dgvdaggsyvfvqrwehnlkqlnrmsvhdqemmigrtkvaneeidgderpetshltrvdl
kengkglkivrqslpygtasgthglyfcaycarlynieqqllsmfgdtdgkrdamlrftk
pvtggyyfapsldkllal

    Sequence, based on observed residues (ATOM records): (download) 
    >5vj0B (B:)
sqvqsgilpehcraaiwieanvkgdvnalrecskvfadklagfeaqfpdahlgavvafgh
dtwralsggvgaeelkdftpygkglapatqydvlihilslrhdvnfsvaqaamaafgdav
evkeeihgfrwveerdlsgfvdgtenpageetrrevavikdgvdaggsyvfvqrwehnlk
qlnrmsvhdqemmigrtkvaneeidgderpetshltrvdlkengkglkivrqslpygtas
gthglyfcaycarlynieqqllsmfgdtdgkrdamlrftkpvtggyyfapsldkllal

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >5vj0C (C:)
mhhhhhhssgrenlyfqghmsqvqsgilpehcraaiwieanvkgdvnalrecskvfadkl
agfeaqfpdahlgavvafghdtwralsggvgaeelkdftpygkglapatqydvlihilsl
rhdvnfsvaqaamaafgdavevkeeihgfrwveerdlsgfvdgtenpageetrrevavik
dgvdaggsyvfvqrwehnlkqlnrmsvhdqemmigrtkvaneeidgderpetshltrvdl
kengkglkivrqslpygtasgthglyfcaycarlynieqqllsmfgdtdgkrdamlrftk
pvtggyyfapsldkllal

    Sequence, based on observed residues (ATOM records): (download) 
    >5vj0C (C:)
sqvqsgilpehcraaiwieanvkgdvnalrecskvfadklagfeaqfpdahlgavvafgh
dtwralsggvgaeelkdftpygkglapatqydvlihilslrhdvnfsvaqaamaafgdav
evkeeihgfrwveerdlsgfvdgtenpageetrrevavikdgvdaggsyvfvqrwehnlk
qlnrmsvhdqemmigrtkvaneeidgderpetshltrvdlkengkglkivrqslpygtas
gthglyfcaycarlynieqqllsmfgdtdgkrdamlrftkpvtggyyfapsldkllal

  • Chain 'D':
    Sequence, based on SEQRES records: (download) 
    >5vj0D (D:)
mhhhhhhssgrenlyfqghmsqvqsgilpehcraaiwieanvkgdvnalrecskvfadkl
agfeaqfpdahlgavvafghdtwralsggvgaeelkdftpygkglapatqydvlihilsl
rhdvnfsvaqaamaafgdavevkeeihgfrwveerdlsgfvdgtenpageetrrevavik
dgvdaggsyvfvqrwehnlkqlnrmsvhdqemmigrtkvaneeidgderpetshltrvdl
kengkglkivrqslpygtasgthglyfcaycarlynieqqllsmfgdtdgkrdamlrftk
pvtggyyfapsldkllal

    Sequence, based on observed residues (ATOM records): (download) 
    >5vj0D (D:)
hmsqvqsgilpehcraaiwieanvkgdvnalrecskvfadklagfeaqfpdahlgavvaf
ghdtwralsggvgaeelkdftpygkglapatqydvlihilslrhdvnfsvaqaamaafgd
avevkeeihgfrwveerdlsgfvdgtenpageetrrevavikdgvdaggsyvfvqrwehn
lkqlnrmsvhdqemmigrtkvaneeidgderpetshltrvdlkengkglkivrqslpygt
asgthglyfcaycarlynieqqllsmfgdtdgkrdamlrftkpvtggyyfapsldkllal