PDB entry 5v85
View 5v85 on RCSB PDB site
Description: The crystal structure of the protein of DegV family COG1307 from Ruminococcus gnavus ATCC 29149 (alternative refinement of PDB 3JR7 with Vaccenic acid)
Class: transport protein
Keywords: DEGV, GUT MICROBIOME, STRUCTURAL GENOMICS, PSI-2, C18:1, Vaccenic acid, TRANSPORT PROTEIN
Deposited on
2017-03-21, released
2018-11-21
The last revision prior to the SCOPe 2.07 freeze date was dated
2018-11-21, with a file datestamp of
2018-11-16.
Experiment type: XRAY
Resolution: 2 Å
R-factor: N/A
AEROSPACI score: 0.31
(click here for full SPACI score report)
Chains and heterogens:
- Chain 'A':
Compound: EDD domain protein, DegV family
Species: Ruminococcus gnavus ATCC 29149 [TaxId:411470]
Gene: RUMGNA_03254
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.07: d5v85a_ - Chain 'B':
Compound: EDD domain protein, DegV family
Species: Ruminococcus gnavus ATCC 29149 [TaxId:411470]
Gene: RUMGNA_03254
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.07: d5v85b_ - Heterogens: VCA, PO4, NA, HOH
PDB Chain Sequences:
- Chain 'A':
Sequence, based on SEQRES records: (download)
>5v85A (A:)
mkttynrwwkkkvwfgrkdmsykvivdscgeftpemkadggfehvalgiqiedtqwtddd
slkqeelllkiaestscaktscpsperymesyhcdaeriyvvtlsaelsgsynsavlgkn
lyeeeygekqihvfnsrsasvgetlialkvqqcekagmtfeevvesvecyieeqhtyfvl
enldtlrkngrltgikslvagalnikpimgstpqgticqkekargmkkalvkmadcvaad
vvnagdkilaiahcnceerakevqrllkerfavkssfivdtsgistvyandggiivvv
Sequence, based on observed residues (ATOM records): (download)
>5v85A (A:)
dmsykvivdscgeftpemkadggfehvalgiqiedtqwtdddslkqeelllkiaestsca
ktscpsperymesyhcdaeriyvvtlsaelsgsynsavlgknlyeeeygekqihvfnsrs
asvgetlialkvqqcekagmtfeevvesvecyieeqhtyfvlenldtlrkngrltgiksa
galnikpimgstpqgticqkekargmkkalvkmadcvaadvvnagdkilaiahcnceera
kevqrllkerfavkssfivdtsgistvyandggiivvv
- Chain 'B':
Sequence, based on SEQRES records: (download)
>5v85B (B:)
mkttynrwwkkkvwfgrkdmsykvivdscgeftpemkadggfehvalgiqiedtqwtddd
slkqeelllkiaestscaktscpsperymesyhcdaeriyvvtlsaelsgsynsavlgkn
lyeeeygekqihvfnsrsasvgetlialkvqqcekagmtfeevvesvecyieeqhtyfvl
enldtlrkngrltgikslvagalnikpimgstpqgticqkekargmkkalvkmadcvaad
vvnagdkilaiahcnceerakevqrllkerfavkssfivdtsgistvyandggiivvv
Sequence, based on observed residues (ATOM records): (download)
>5v85B (B:)
kdmsykvivdscgeftpemkadggfehvalgiqiedtqwtdddslkqeelllkiaestsc
aktscpsperymesyhcdaeriyvvtlsaelsgsynsavlgknlyeeeygekqihvfnsr
sasvgetlialkvqqcekagmtfeevvesvecyieeqhtyfvlenldtlrkngrltgiks
lvalnikpimgstpqgticqkekargmkkalvkmadcvaadvvnagdkilaiahcnceer
akevqrllkerfavkssfivdtsgistvyandggiivvv