PDB entry 5v4d

View 5v4d on RCSB PDB site
Description: Crystal Structure of the Protein of Unknown Function of the Conserved Rid Protein Family YyfA from Yersinia pestis
Class: Structural genomics, unknown function
Keywords: alpha-beta fold, enamine/imine demainase (Rid), Structural Genomics, Center for Structural Genomics of Infectious Diseases, CSGID, unknown function
Deposited on 2017-03-09, released 2017-04-05
The last revision prior to the SCOPe 2.08 freeze date was dated 2018-01-24, with a file datestamp of 2018-01-19.
Experiment type: XRAY
Resolution: 1.6 Å
R-factor: N/A
AEROSPACI score: 0.44 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Putative translational inhibitor protein
    Species: Yersinia pestis [TaxId:632]
    Gene: tdcF3, y3551, YP_2944, YPO0627
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q7CGF7 (3-127)
      • expression tag (1-2)
    Domains in SCOPe 2.08: d5v4da1, d5v4da2
  • Chain 'B':
    Compound: Putative translational inhibitor protein
    Species: Yersinia pestis [TaxId:632]
    Gene: tdcF3, y3551, YP_2944, YPO0627
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q7CGF7 (3-127)
      • expression tag (2)
    Domains in SCOPe 2.08: d5v4db1, d5v4db2
  • Chain 'C':
    Compound: Putative translational inhibitor protein
    Species: Yersinia pestis [TaxId:632]
    Gene: tdcF3, y3551, YP_2944, YPO0627
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q7CGF7 (3-127)
      • expression tag (2)
    Domains in SCOPe 2.08: d5v4dc1, d5v4dc2
  • Chain 'D':
    Compound: Putative translational inhibitor protein
    Species: Yersinia pestis [TaxId:632]
    Gene: tdcF3, y3551, YP_2944, YPO0627
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q7CGF7 (3-127)
      • expression tag (1-2)
    Domains in SCOPe 2.08: d5v4dd1, d5v4dd2
  • Chain 'E':
    Compound: Putative translational inhibitor protein
    Species: Yersinia pestis [TaxId:632]
    Gene: tdcF3, y3551, YP_2944, YPO0627
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q7CGF7 (3-127)
      • expression tag (1-2)
    Domains in SCOPe 2.08: d5v4de1, d5v4de2
  • Chain 'F':
    Compound: Putative translational inhibitor protein
    Species: Yersinia pestis [TaxId:632]
    Gene: tdcF3, y3551, YP_2944, YPO0627
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q7CGF7 (3-127)
      • expression tag (2)
    Domains in SCOPe 2.08: d5v4df1, d5v4df2
  • Heterogens: ACY, CA, GOL, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >5v4dA (A:)
snaksvietknapsaigpysqaicfngilyasgqipinpdtgdlvendiekqtrqvlkni
davllqagttkdkivkttifitninnssqvndiyadyfkgtifparstvevsalpkgalv
eieviagv

    Sequence, based on observed residues (ATOM records): (download) 
    >5v4dA (A:)
naksvietknapsaigpysqaicfngilyasgqipinpdtgdlvendiekqtrqvlknid
avllqagttkdkivkttifitninnssqvndiyadyfkgtifparstvevsalpkgalve
ieviagv

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >5v4dB (B:)
snaksvietknapsaigpysqaicfngilyasgqipinpdtgdlvendiekqtrqvlkni
davllqagttkdkivkttifitninnssqvndiyadyfkgtifparstvevsalpkgalv
eieviagv

    Sequence, based on observed residues (ATOM records): (download) 
    >5v4dB (B:)
aksvietknapsaigpysqaicfngilyasgqipinpdtgdlvendiekqtrqvlknida
vllqagttkdkivkttifitninnssqvndiyadyfkgtifparstvevsalpkgalvei
eviagv

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >5v4dC (C:)
snaksvietknapsaigpysqaicfngilyasgqipinpdtgdlvendiekqtrqvlkni
davllqagttkdkivkttifitninnssqvndiyadyfkgtifparstvevsalpkgalv
eieviagv

    Sequence, based on observed residues (ATOM records): (download) 
    >5v4dC (C:)
aksvietknapsaigpysqaicfngilyasgqipinpdtgdlvendiekqtrqvlknida
vllqagttkdkivkttifitninnssqvndiyadyfkgtifparstvevsalpkgalvei
eviagv

  • Chain 'D':
    Sequence, based on SEQRES records: (download) 
    >5v4dD (D:)
snaksvietknapsaigpysqaicfngilyasgqipinpdtgdlvendiekqtrqvlkni
davllqagttkdkivkttifitninnssqvndiyadyfkgtifparstvevsalpkgalv
eieviagv

    Sequence, based on observed residues (ATOM records): (download) 
    >5v4dD (D:)
naksvietknapsaigpysqaicfngilyasgqipinpdtgdlvendiekqtrqvlknid
avllqagttkdkivkttifitninnssqvndiyadyfkgtifparstvevsalpkgalve
ieviagv

  • Chain 'E':
    Sequence, based on SEQRES records: (download) 
    >5v4dE (E:)
snaksvietknapsaigpysqaicfngilyasgqipinpdtgdlvendiekqtrqvlkni
davllqagttkdkivkttifitninnssqvndiyadyfkgtifparstvevsalpkgalv
eieviagv

    Sequence, based on observed residues (ATOM records): (download) 
    >5v4dE (E:)
naksvietknapsaigpysqaicfngilyasgqipinpdtgdlvendiekqtrqvlknid
avllqagttkdkivkttifitninnssqvndiyadyfkgtifparstvevsalpkgalve
ieviagv

  • Chain 'F':
    Sequence, based on SEQRES records: (download) 
    >5v4dF (F:)
snaksvietknapsaigpysqaicfngilyasgqipinpdtgdlvendiekqtrqvlkni
davllqagttkdkivkttifitninnssqvndiyadyfkgtifparstvevsalpkgalv
eieviagv

    Sequence, based on observed residues (ATOM records): (download) 
    >5v4dF (F:)
aksvietknapsaigpysqaicfngilyasgqipinpdtgdlvendiekqtrqvlknida
vllqagttkdkivkttifitninnssqvndiyadyfkgtifparstvevsalpkgalvei
eviagv