PDB entry 5usl

View 5usl on RCSB PDB site
Description: Structure of vaccinia virus D8 protein bound to human Fab vv304
Class: VIRAL PROTEIN/Immune System
Keywords: viral protein, antibody, Fab, Immune response, Ig fold, VIRAL PROTEIN-Immune System complex
Deposited on 2017-02-13, released 2017-09-20
The last revision prior to the SCOPe 2.06 freeze date was dated 2017-09-20, with a file datestamp of 2017-09-15.
Experiment type: XRAY
Resolution: 2.9 Å
R-factor: N/A
AEROSPACI score: 0.15 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: IMV membrane protein
    Species: Vaccinia virus [TaxId:10245]
    Gene: VAC_DPP17_124, VACAC2_124, VACCL3_124
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.06: d5usla_
  • Chain 'B':
    Compound: Fab vv304 Heavy chain
    Species: Homo sapiens [TaxId:9606]
    Database cross-references and differences (RAF-indexed):
    • PDB 5USL (0-223)
  • Chain 'C':
    Compound: Fab vv304 Light chain
    Species: Homo sapiens [TaxId:9606]
    Database cross-references and differences (RAF-indexed):
    • PDB 5USL (Start-210)
    Domains in SCOPe 2.06: d5uslc1, d5uslc2
  • Chain 'H':
    Compound: Fab vv304 Heavy chain
    Species: Homo sapiens [TaxId:9606]
    Database cross-references and differences (RAF-indexed):
    • PDB 5USL (0-223)
  • Chain 'L':
    Compound: Fab vv304 Light chain
    Species: Homo sapiens [TaxId:9606]
    Database cross-references and differences (RAF-indexed):
    • PDB 5USL (Start-210)
    Domains in SCOPe 2.06: d5usll1, d5usll2
  • Chain 'X':
    Compound: IMV membrane protein
    Species: Vaccinia virus [TaxId:10245]
    Gene: VAC_DPP17_124, VACAC2_124, VACCL3_124
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.06: d5uslx_

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >5uslA (A:)
mpqqlspinietkkaisnarlkpldihyneskpttiqntgklvrinfkggyisggflpne
yvlsslhiywgkeddygsnhlidvykysgeinlvhwnkkkyssyeeakkhddgliiisif
lqvldhknvyfqkivnqldsirsantsapfdsvfyldnllpskldyftylgttinhsada
vwiifptpinihsdqlskfrtllslsnhegkphyitenyrnpyklnddtevyysghhhhh
h

    Sequence, based on observed residues (ATOM records): (download) 
    >5uslA (A:)
qqlspinietkkaisnarlkpldihyneskpttiqntgklvrinfkggyisggflpneyv
lsslhiywgkeddygsnhlidvykysgeinlvhwnkkkyssyeeakkhddgliiisiflq
vldhknvyfqkivnqldsirsantsapfdsvfyldnllpskldyftylgttinhsadavw
iifptpinihsdqlskfrtllslphyitenyrnpyklnddtevyys

  • Chain 'B':
    No sequence available.

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >5uslC (C:)
syeltqppsvsvspgqtaritcsgdalpkqfaywyqqkpgqapvvmiykdserpsgiper
fsgsssgttvtstisgvqaedeadyycqsvdnsgtyevfgggtqltvlgqpkaapsvtlf
ppsseelqankatlvclisdfypgavtvawkadsspvkagvetttpskqsnnsyaassyl
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    Sequence, based on observed residues (ATOM records): (download) 
    >5uslC (C:)
yeltqppsvsvspgqtaritcsgdalpkqfaywyqqkpgqapvvmiykdserpsgiperf
sgsssgttvtstisgvqaedeadyycqsvdnsgtyevfgggtqltvlgqpkaapsvtlfp
psseelqankatlvclisdfypgavtvawkadsspvkagvetttpskqsnnsyaassyls
ltpeqwkshrsyscqvthegstvektmaha

  • Chain 'H':
    No sequence available.

  • Chain 'L':
    Sequence, based on SEQRES records: (download) 
    >5uslL (L:)
syeltqppsvsvspgqtaritcsgdalpkqfaywyqqkpgqapvvmiykdserpsgiper
fsgsssgttvtstisgvqaedeadyycqsvdnsgtyevfgggtqltvlgqpkaapsvtlf
ppsseelqankatlvclisdfypgavtvawkadsspvkagvetttpskqsnnsyaassyl
sltpeqwkshrsyscqvthegstvektmaha

    Sequence, based on observed residues (ATOM records): (download) 
    >5uslL (L:)
yeltqppsvsvspgqtaritcsgdalpkqfaywyqqkpgqapvvmiykdserpsgiperf
sgsssgttvtstisgvqaedeadyycqsvdnsgtyevfgggtqltvlgqpkaapsvtlfp
psseelqankatlvclisdfypgavtvawkadsspvkagvetttpskqsnnsyaassyls
ltpeqwkshrsyscqvthegstvektmaha

  • Chain 'X':
    Sequence, based on SEQRES records: (download) 
    >5uslX (X:)
mpqqlspinietkkaisnarlkpldihyneskpttiqntgklvrinfkggyisggflpne
yvlsslhiywgkeddygsnhlidvykysgeinlvhwnkkkyssyeeakkhddgliiisif
lqvldhknvyfqkivnqldsirsantsapfdsvfyldnllpskldyftylgttinhsada
vwiifptpinihsdqlskfrtllslsnhegkphyitenyrnpyklnddtevyysghhhhh
h

    Sequence, based on observed residues (ATOM records): (download) 
    >5uslX (X:)
qqlspinietkkaisnarlkpldihyneskpttiqntgklvrinfkggyisggflpneyv
lsslhiywgkeddygsnhlidvykysgeinlvhwnkkkyssyeeakkhddgliiisiflq
vldhknvyfqkivnqldsirsantsapfdsvfyldnllpskldyftylgttinhsadavw
iifptpinihsdqlskfrtllslkphyitenyrnpyklnddtevyys