PDB entry 5umn

View 5umn on RCSB PDB site
Description: Crystal structure of C05 VPGSGW mutant bound to H3 influenza hemagglutinin, HA1 subunit
Class: immune system
Keywords: Influenza, Fab, Hemagglutinin, IMMUNE SYSTEM
Deposited on 2017-01-27, released 2017-05-24
The last revision prior to the SCOPe 2.08 freeze date was dated 2020-07-29, with a file datestamp of 2020-07-04.
Experiment type: XRAY
Resolution: 1.97 Å
R-factor: N/A
AEROSPACI score: 0.4 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Hemagglutinin
    Species: Influenza A virus [TaxId:506350]
    Gene: HA
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d5umna_
  • Chain 'B':
    Compound: Hemagglutinin
    Species: Influenza A virus [TaxId:506350]
    Gene: HA
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d5umnb_
  • Chain 'C':
    Compound: Antibody C05 VPGSGW mutant, heavy chain
    Species: Homo sapiens [TaxId:9606]
    Database cross-references and differences (RAF-indexed):
    • PDB 5UMN
    Domains in SCOPe 2.08: d5umnc1, d5umnc2
  • Chain 'D':
    Compound: Antibody C05, Light Chain
    Species: Homo sapiens [TaxId:9606]
    Database cross-references and differences (RAF-indexed):
    • PDB 5UMN (0-End)
    Domains in SCOPe 2.08: d5umnd1, d5umnd2
  • Chain 'E':
    Compound: Antibody C05 VPGSGW mutant, heavy chain
    Species: Homo sapiens [TaxId:9606]
    Database cross-references and differences (RAF-indexed):
    • PDB 5UMN
    Domains in SCOPe 2.08: d5umne1, d5umne2
  • Chain 'F':
    Compound: Antibody C05, Light Chain
    Species: Homo sapiens [TaxId:9606]
    Database cross-references and differences (RAF-indexed):
    • PDB 5UMN (0-End)
    Domains in SCOPe 2.08: d5umnf1, d5umnf2
  • Heterogens: NAG, 1PE, NA, FLC, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download)
    >5umnA (A:)
    vqssstgkicnnphrildgidctlidallgdphcdvfqnetwdlfverskafsncypydv
    pdyaslrslvassgtlefitegftwtgvtqnggsnackrgpgsgffsrlnwltksgstyp
    vlnvtmpnndnfdklyiwgvhhpstnqeqtslyvqasgrvtvstrrsqqtiipnigsrpw
    vrglssrisiywtivkpgdvlvinsngnliaprgyfkmrtgkssimrsdapidtciseci
    tpngsipndkpfqnvnkitygacpkyvghhhhhh
    

    Sequence, based on observed residues (ATOM records): (download)
    >5umnA (A:)
    vqssstgkicnnphrildgidctlidallgdphcdvfqnetwdlfverskafsncypydv
    pdyaslrslvassgtlefitegftwtgvtqnggsnackrgpgsgffsrlnwltksgstyp
    vlnvtmpnndnfdklyiwgvhhpstnqeqtslyvqasgrvtvstrrsqqtiipnigsrpw
    vrglssrisiywtivkpgdvlvinsngnliaprgyfkmrtgkssimrsdapidtciseci
    tpngsipndkpfqnvnkitygacpkyv
    

  • Chain 'B':
    Sequence, based on SEQRES records: (download)
    >5umnB (B:)
    vqssstgkicnnphrildgidctlidallgdphcdvfqnetwdlfverskafsncypydv
    pdyaslrslvassgtlefitegftwtgvtqnggsnackrgpgsgffsrlnwltksgstyp
    vlnvtmpnndnfdklyiwgvhhpstnqeqtslyvqasgrvtvstrrsqqtiipnigsrpw
    vrglssrisiywtivkpgdvlvinsngnliaprgyfkmrtgkssimrsdapidtciseci
    tpngsipndkpfqnvnkitygacpkyvghhhhhh
    

    Sequence, based on observed residues (ATOM records): (download)
    >5umnB (B:)
    icnnphrildgidctlidallgdphcdvfqnetwdlfverskafsncypydvpdyaslrs
    lvassgtlefitegftwtgvtqnggsnackrgpgsgffsrlnwltksgstypvlnvtmpn
    ndnfdklyiwgvhhpstnqeqtslyvqasgrvtvstrrsqqtiipnigsrpwvrglssri
    siywtivkpgdvlvinsngnliaprgyfkmrtgkssimrsdapidtcisecitpnnkity
    gac
    

  • Chain 'C':
    Sequence, based on SEQRES records: (download)
    >5umnC (C:)
    qvqlqesggglvqpgeslrlscvgsgssfgestlsyyavswvrqapgkglewlsiinagg
    gdidyadsvegrftisrdnsketlylqmtnlrvedtgvyycakhmsmqqvpgsgweradl
    vgdafdvwgqgtmvtvssastkgpsvfplapsskstsggtaalgclvkdyfpepvtvswn
    sgaltsgvhtfpavlqssglyslssvvtvpssslgtqtyicnvnhkpsntkvdkrvepks
    chhhhhh
    

    Sequence, based on observed residues (ATOM records): (download)
    >5umnC (C:)
    vqlqesggglvqpgeslrlscvgsgssfgestlsyyavswvrqapgkglewlsiinaggg
    didyadsvegrftisrdnsketlylqmtnlrvedtgvyycakhmsmqqvpgsgweradlv
    gdafdvwgqgtmvtvssastkgpsvfplapsskstsggtaalgclvkdyfpepvtvswns
    galtsgvhtfpavlqssglyslssvvtvpssslgtqtyicnvnhkpsntkvdkrvepk
    

  • Chain 'D':
    Sequence, based on SEQRES records: (download)
    >5umnD (D:)
    diqltqspsslsasvgdrvtltcqasqdirkflnwyqqkpgkgpklliydasnlqrgvps
    rfsgggsgtdftliisslqpedvgtyycqqydglpftfgggtkvvikrtvaapsvfifpp
    sdeqlksgtasvvcllnnfypreakvqwkvdnalqsgnsqesvteqdskdstyslsstlt
    lskadyekhkvyacevthqglsspvtksfnrgec
    

    Sequence, based on observed residues (ATOM records): (download)
    >5umnD (D:)
    diqltqspsslsasvgdrvtltcqasqdirkflnwyqqkpgkgpklliydasnlqrgvps
    rfsgggsgtdftliisslqpedvgtyycqqydglpftfgggtkvvikrtvaapsvfifpp
    sdeqlksgtasvvcllnnfypreakvqwkvdnalqsgnsqesvteqdskdstyslsstlt
    lskadyekhkvyacevthqglsspvtksfnrge
    

  • Chain 'E':
    Sequence, based on SEQRES records: (download)
    >5umnE (E:)
    qvqlqesggglvqpgeslrlscvgsgssfgestlsyyavswvrqapgkglewlsiinagg
    gdidyadsvegrftisrdnsketlylqmtnlrvedtgvyycakhmsmqqvpgsgweradl
    vgdafdvwgqgtmvtvssastkgpsvfplapsskstsggtaalgclvkdyfpepvtvswn
    sgaltsgvhtfpavlqssglyslssvvtvpssslgtqtyicnvnhkpsntkvdkrvepks
    chhhhhh
    

    Sequence, based on observed residues (ATOM records): (download)
    >5umnE (E:)
    vqlqesggglvqpgeslrlscvgsgssfgestlsyyavswvrqapgkglewlsiinaggg
    didyadsvegrftisrdnsketlylqmtnlrvedtgvyycakhmsmqqvpgsgweradlv
    gdafdvwgqgtmvtvssastkgpsvfplapsskstsggtaalgclvkdyfpepvtvswns
    galtsgvhtfpavlqssglyslssvvtvpssslgtqtyicnvnhkpsntkvdkrvepk
    

  • Chain 'F':
    Sequence, based on SEQRES records: (download)
    >5umnF (F:)
    diqltqspsslsasvgdrvtltcqasqdirkflnwyqqkpgkgpklliydasnlqrgvps
    rfsgggsgtdftliisslqpedvgtyycqqydglpftfgggtkvvikrtvaapsvfifpp
    sdeqlksgtasvvcllnnfypreakvqwkvdnalqsgnsqesvteqdskdstyslsstlt
    lskadyekhkvyacevthqglsspvtksfnrgec
    

    Sequence, based on observed residues (ATOM records): (download)
    >5umnF (F:)
    diqltqspsslsasvgdrvtltcqasqdirkflnwyqqkpgkgpklliydasnlqrgvps
    rfsgggsgtdftliisslqpedvgtyycqqydglpftfgggtkvvikrtvaapsvfifpp
    sdeqlksgtasvvcllnnfypreakvqwkvdnalqsgnsqesvteqdskdstyslsstlt
    lskadyekhkvyacevthqglsspvtksfnrge