PDB entry 5um0

View 5um0 on RCSB PDB site
Description: Crystal structure of 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase from Neisseria gonorrhoeae
Class: isomerase
Keywords: SSGCID, 2, 3-bisphosphoglycerate-dependent phosphoglycerate mutase, mutase, pyruvate synthesis, Structural Genomics, Seattle Structural Genomics Center for Infectious Disease, ISOMERASE
Deposited on 2017-01-25, released 2017-02-15
The last revision prior to the SCOPe 2.08 freeze date was dated 2017-02-15, with a file datestamp of 2017-02-10.
Experiment type: XRAY
Resolution: 1.85 Å
R-factor: N/A
AEROSPACI score: 0.36 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase
    Species: Neisseria gonorrhoeae (strain NCCP11945) [TaxId:521006]
    Gene: gpmA, NGK_0248
    Database cross-references and differences (RAF-indexed):
    • Uniprot B4RIY7 (8-234)
      • expression tag (5-7)
    Domains in SCOPe 2.08: d5um0a1, d5um0a2
  • Chain 'B':
    Compound: 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase
    Species: Neisseria gonorrhoeae (strain NCCP11945) [TaxId:521006]
    Gene: gpmA, NGK_0248
    Database cross-references and differences (RAF-indexed):
    • Uniprot B4RIY7 (8-234)
      • expression tag (5-7)
    Domains in SCOPe 2.08: d5um0b1, d5um0b2
  • Chain 'C':
    Compound: 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase
    Species: Neisseria gonorrhoeae (strain NCCP11945) [TaxId:521006]
    Gene: gpmA, NGK_0248
    Database cross-references and differences (RAF-indexed):
    • Uniprot B4RIY7 (8-234)
      • expression tag (5-7)
    Domains in SCOPe 2.08: d5um0c1, d5um0c2
  • Chain 'D':
    Compound: 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase
    Species: Neisseria gonorrhoeae (strain NCCP11945) [TaxId:521006]
    Gene: gpmA, NGK_0248
    Database cross-references and differences (RAF-indexed):
    • Uniprot B4RIY7 (8-234)
      • expression tag (7)
    Domains in SCOPe 2.08: d5um0d1, d5um0d2
  • Heterogens: TLA, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >5um0A (A:)
mahhhhhhmelvfirhgqsewnaknlftgwrdvklseqglaeaaaagkklkengyefdia
ftsvltraiktcnivleesdqlfvpqiktwrlnerhygrlqgldkkqtaekygdeqvriw
rrsydtlpplldkddafsahkdrryahlpadvvpdgenlkvtlervlpfwedqiapails
gkrvlvaahgnslralakhiegisdedimgleiptgqplvyklddnlkviekfyl

    Sequence, based on observed residues (ATOM records): (download) 
    >5um0A (A:)
hhhmelvfirhgqsewnaknlftgwrdvklseqglaeaaaagkklkengyefdiaftsvl
traiktcnivleesdqlfvpqiktwrlnerhygrlqgldkkqtaekygdeqvriwrrsyd
tlpplldkddafsahkdrryahlpadvvpdgenlkvtlervlpfwedqiapailsgkrvl
vaahgnslralakhiegisdedimgleiptgqplvyklddnlkviekfyl

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >5um0B (B:)
mahhhhhhmelvfirhgqsewnaknlftgwrdvklseqglaeaaaagkklkengyefdia
ftsvltraiktcnivleesdqlfvpqiktwrlnerhygrlqgldkkqtaekygdeqvriw
rrsydtlpplldkddafsahkdrryahlpadvvpdgenlkvtlervlpfwedqiapails
gkrvlvaahgnslralakhiegisdedimgleiptgqplvyklddnlkviekfyl

    Sequence, based on observed residues (ATOM records): (download) 
    >5um0B (B:)
hhhmelvfirhgqsewnaknlftgwrdvklseqglaeaaaagkklkengyefdiaftsvl
traiktcnivleesdqlfvpqiktwrlnerhygrlqgldkkqtaekygdeqvriwrrsyd
tlpplldkddafsahkdrryahlpadvvpdgenlkvtlervlpfwedqiapailsgkrvl
vaahgnslralakhiegisdedimgleiptgqplvyklddnlkviekfyl

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >5um0C (C:)
mahhhhhhmelvfirhgqsewnaknlftgwrdvklseqglaeaaaagkklkengyefdia
ftsvltraiktcnivleesdqlfvpqiktwrlnerhygrlqgldkkqtaekygdeqvriw
rrsydtlpplldkddafsahkdrryahlpadvvpdgenlkvtlervlpfwedqiapails
gkrvlvaahgnslralakhiegisdedimgleiptgqplvyklddnlkviekfyl

    Sequence, based on observed residues (ATOM records): (download) 
    >5um0C (C:)
hhhmelvfirhgqsewnaknlftgwrdvklseqglaeaaaagkklkengyefdiaftsvl
traiktcnivleesdqlfvpqiktwrlnerhygrlqgldkkqtaekygdeqvriwrrsyd
tlpplldkddafsahkdrryahlpadvvpdgenlkvtlervlpfwedqiapailsgkrvl
vaahgnslralakhiegisdedimgleiptgqplvyklddnlkviekfyl

  • Chain 'D':
    Sequence, based on SEQRES records: (download) 
    >5um0D (D:)
mahhhhhhmelvfirhgqsewnaknlftgwrdvklseqglaeaaaagkklkengyefdia
ftsvltraiktcnivleesdqlfvpqiktwrlnerhygrlqgldkkqtaekygdeqvriw
rrsydtlpplldkddafsahkdrryahlpadvvpdgenlkvtlervlpfwedqiapails
gkrvlvaahgnslralakhiegisdedimgleiptgqplvyklddnlkviekfyl

    Sequence, based on observed residues (ATOM records): (download) 
    >5um0D (D:)
hmelvfirhgqsewnaknlftgwrdvklseqglaeaaaagkklkengyefdiaftsvltr
aiktcnivleesdqlfvpqiktwrlnerhygrlqgldkkqtaekygdeqvriwrrsydtl
pplldkddafsahkdrryahlpadvvpdgenlkvtlervlpfwedqiapailsgkrvlva
ahgnslralakhiegisdedimgleiptgqplvyklddnlkviekfyl