PDB entry 5ukr

View 5ukr on RCSB PDB site
Description: Structure of unliganded anti-gp120 CD4bs antibody DH522.2 Fab in complex with a gp120 core
Class: immune system
Keywords: HIV gp120 immune system, immune system
Deposited on 2017-01-23, released 2017-12-06
The last revision prior to the SCOPe 2.08 freeze date was dated 2020-07-29, with a file datestamp of 2020-07-04.
Experiment type: XRAY
Resolution: 2.71 Å
R-factor: N/A
AEROSPACI score: 0.24 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'G':
    Compound: Chimeric B.YU2 gp120 core derived from HIV-1 Env
    Species: Human immunodeficiency virus 1 [TaxId:11676]
    Database cross-references and differences (RAF-indexed):
    • PDB 5UKR
  • Chain 'H':
    Compound: DH522.2 Fab fragment heavy chain
    Species: MACACA MULATTA [TaxId:9544]
    Database cross-references and differences (RAF-indexed):
    • PDB 5UKR (0-End)
    Domains in SCOPe 2.08: d5ukrh1, d5ukrh2
  • Chain 'L':
    Compound: DH522.2 Fab fragment light chain
    Species: MACACA MULATTA [TaxId:9544]
    Database cross-references and differences (RAF-indexed):
    • PDB 5UKR
    Domains in SCOPe 2.08: d5ukrl1, d5ukrl2
  • Heterogens: NAG, HOH

PDB Chain Sequences:

  • Chain 'G':
    No sequence available.

  • Chain 'H':
    Sequence, based on SEQRES records: (download) 
    >5ukrH (H:)
qvqlqesgpglvkpsetlsltcavsggsigddyywnwirqspgkglewigsiygsfggtn
fnpslknrvtismdtsnnqvslklnsvtaadtavyycargshsivvlfgyyfdywgqgvl
vtvssastkgpsvfplapssrstsestaalgclvkdyfpepvtvswnsgsltsgvhtfpa
vlqssglyslssvvtvpssslgtqtyvcnvnhkpsntkvdkrveiktcgg

    Sequence, based on observed residues (ATOM records): (download) 
    >5ukrH (H:)
qvqlqesgpglvkpsetlsltcavsggsigddyywnwirqspgkglewigsiygsfggtn
fnpslknrvtismdtsnnqvslklnsvtaadtavyycargshsivvlfgyyfdywgqgvl
vtvssastkgpsvfplapestaalgclvkdyfpepvtvswnsgsltsgvhtfpavlqssg
lyslssvvtvpssslgtqtyvcnvnhkpsntkvdkrveikt

  • Chain 'L':
    Sequence, based on SEQRES records: (download) 
    >5ukrL (L:)
qsaltqppsvskslgqsvtiscsgttndigayngvswyqhhsdtaprlliyevnkrpsgv
sdrfsgsksgntasltisglqaedeadyycgsyrsgstwvfgggtrltvlgqpkasptvt
lfppsseelqankatlvclisdfypgvvkvawkadgsavnagvetttpskqsnnkyaass
ylsltsdqwkshksyscqvthegstvektvapaecs

    Sequence, based on observed residues (ATOM records): (download) 
    >5ukrL (L:)
altqppsvskslgqsvtiscsgttndigayngvswyqhhsdtaprlliyevnkrpsgvsd
rfsgsksgntasltisglqaedeadyycgsyrsgstwvfgggtrltvlgqpkasptvtlf
ppsseelqankatlvclisdfypgvvkvawkadgsavnagvetttpskqsnnkyaassyl
sltsdqwkshksyscqvthegstvektvap