PDB entry 5u8p
View 5u8p on RCSB PDB site
Description: Crystal structure of a short chain dehydrogenase from Burkholderia cenocepacia J2315 in complex with NAD
Class: oxidoreductase
Keywords: SSGCID, structural genomics, Seattle Structural Genomics Center for Infectious Disease, OXIDOREDUCTASE
Deposited on
2016-12-14, released
2017-02-15
The last revision prior to the SCOPe 2.07 freeze date was dated
2017-02-15, with a file datestamp of
2017-02-10.
Experiment type: XRAY
Resolution: 1.4 Å
R-factor: N/A
AEROSPACI score: 0.53
(click here for full SPACI score report)
Chains and heterogens:
- Chain 'A':
Compound: Short chain dehydrogenase
Species: Burkholderia cenocepacia (strain ATCC BAA-245 / DSM 16553 / LMG 16656 / NCTC 13227 / J2315 / CF5610) [TaxId:216591]
Gene: BCAL1205
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.07: d5u8pa_ - Chain 'B':
Compound: Short chain dehydrogenase
Species: Burkholderia cenocepacia (strain ATCC BAA-245 / DSM 16553 / LMG 16656 / NCTC 13227 / J2315 / CF5610) [TaxId:216591]
Gene: BCAL1205
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.07: d5u8pb_ - Heterogens: NAD, MG, HOH
PDB Chain Sequences:
- Chain 'A':
Sequence, based on SEQRES records: (download)
>5u8pA (A:)
mahhhhhhmavdappaaqgltnpvdlypkppfphqvqappglasrmqprpdhgeqsyrgr
grlvgrktlvtggdsgigraaaiafaregadvaigylpveesdarevvaliraagrqava
lpgdirdetfcqrlvaraaealggldilvnnaarqqaldsigemttehfdatvktnlygm
fwitkaaiphlppgasiinttsvqavrasanlldyattkagiiaftrslakqlgprgirv
navapgpywtplqssggqppetvvnyaagspygrpgqpaeiaplyvalaasetsyangqv
wgadgglgif
Sequence, based on observed residues (ATOM records): (download)
>5u8pA (A:)
gltnpvdlypkppfphqvqappglasrmqprpdhgeqsyrgrgrlvgrktlvtggdsgig
raaaiafaregadvaigylpveesdarevvaliraagrqavalpgdirdetfcqrlvara
aealggldilvnnaarqqaldsigemttehfdatvktnlygmfwitkaaiphlppgasii
nttsvqavrasanlldyattkagiiaftrslakqlgprgirvnavapgpywtplqssggq
ppetvvnyaagspygrpgqpaeiaplyvalaasetsyangqvwgadgglgif
- Chain 'B':
Sequence, based on SEQRES records: (download)
>5u8pB (B:)
mahhhhhhmavdappaaqgltnpvdlypkppfphqvqappglasrmqprpdhgeqsyrgr
grlvgrktlvtggdsgigraaaiafaregadvaigylpveesdarevvaliraagrqava
lpgdirdetfcqrlvaraaealggldilvnnaarqqaldsigemttehfdatvktnlygm
fwitkaaiphlppgasiinttsvqavrasanlldyattkagiiaftrslakqlgprgirv
navapgpywtplqssggqppetvvnyaagspygrpgqpaeiaplyvalaasetsyangqv
wgadgglgif
Sequence, based on observed residues (ATOM records): (download)
>5u8pB (B:)
gltnpvdlypkppfphqvqappglasrmqprpdhgeqsyrgrgrlvgrktlvtggdsgig
raaaiafaregadvaigylpveesdarevvaliraagrqavalpgdirdetfcqrlvara
aealggldilvnnaarqqaldsigemttehfdatvktnlygmfwitkaaiphlppgasii
nttsvqavrasanlldyattkagiiaftrslakqlgprgirvnavapgpywtplqssggq
ppetvvnyaagspygrpgqpaeiaplyvalaasetsyangqvwgadgglgif