PDB entry 5u8p

View 5u8p on RCSB PDB site
Description: Crystal structure of a short chain dehydrogenase from Burkholderia cenocepacia J2315 in complex with NAD
Class: oxidoreductase
Keywords: SSGCID, structural genomics, Seattle Structural Genomics Center for Infectious Disease, OXIDOREDUCTASE
Deposited on 2016-12-14, released 2017-02-15
The last revision prior to the SCOPe 2.07 freeze date was dated 2017-02-15, with a file datestamp of 2017-02-10.
Experiment type: XRAY
Resolution: 1.4 Å
R-factor: N/A
AEROSPACI score: 0.53 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Short chain dehydrogenase
    Species: Burkholderia cenocepacia (strain ATCC BAA-245 / DSM 16553 / LMG 16656 / NCTC 13227 / J2315 / CF5610) [TaxId:216591]
    Gene: BCAL1205
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d5u8pa_
  • Chain 'B':
    Compound: Short chain dehydrogenase
    Species: Burkholderia cenocepacia (strain ATCC BAA-245 / DSM 16553 / LMG 16656 / NCTC 13227 / J2315 / CF5610) [TaxId:216591]
    Gene: BCAL1205
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d5u8pb_
  • Heterogens: NAD, MG, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >5u8pA (A:)
mahhhhhhmavdappaaqgltnpvdlypkppfphqvqappglasrmqprpdhgeqsyrgr
grlvgrktlvtggdsgigraaaiafaregadvaigylpveesdarevvaliraagrqava
lpgdirdetfcqrlvaraaealggldilvnnaarqqaldsigemttehfdatvktnlygm
fwitkaaiphlppgasiinttsvqavrasanlldyattkagiiaftrslakqlgprgirv
navapgpywtplqssggqppetvvnyaagspygrpgqpaeiaplyvalaasetsyangqv
wgadgglgif

    Sequence, based on observed residues (ATOM records): (download) 
    >5u8pA (A:)
gltnpvdlypkppfphqvqappglasrmqprpdhgeqsyrgrgrlvgrktlvtggdsgig
raaaiafaregadvaigylpveesdarevvaliraagrqavalpgdirdetfcqrlvara
aealggldilvnnaarqqaldsigemttehfdatvktnlygmfwitkaaiphlppgasii
nttsvqavrasanlldyattkagiiaftrslakqlgprgirvnavapgpywtplqssggq
ppetvvnyaagspygrpgqpaeiaplyvalaasetsyangqvwgadgglgif

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >5u8pB (B:)
mahhhhhhmavdappaaqgltnpvdlypkppfphqvqappglasrmqprpdhgeqsyrgr
grlvgrktlvtggdsgigraaaiafaregadvaigylpveesdarevvaliraagrqava
lpgdirdetfcqrlvaraaealggldilvnnaarqqaldsigemttehfdatvktnlygm
fwitkaaiphlppgasiinttsvqavrasanlldyattkagiiaftrslakqlgprgirv
navapgpywtplqssggqppetvvnyaagspygrpgqpaeiaplyvalaasetsyangqv
wgadgglgif

    Sequence, based on observed residues (ATOM records): (download) 
    >5u8pB (B:)
gltnpvdlypkppfphqvqappglasrmqprpdhgeqsyrgrgrlvgrktlvtggdsgig
raaaiafaregadvaigylpveesdarevvaliraagrqavalpgdirdetfcqrlvara
aealggldilvnnaarqqaldsigemttehfdatvktnlygmfwitkaaiphlppgasii
nttsvqavrasanlldyattkagiiaftrslakqlgprgirvnavapgpywtplqssggq
ppetvvnyaagspygrpgqpaeiaplyvalaasetsyangqvwgadgglgif