PDB entry 5tvs

View 5tvs on RCSB PDB site
Description: JMJD2A in complex with Ni(II)
Class: oxidoreductase
Keywords: oxidoreductase demethylase monooxygenase epigenetics, OXIDOREDUCTASE
Deposited on 2016-11-09, released 2017-02-01
The last revision prior to the SCOPe 2.06 freeze date was dated 2017-02-01, with a file datestamp of 2017-01-26.
Experiment type: XRAY
Resolution: 2.75 Å
R-factor: N/A
AEROSPACI score: 0.17 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: lysine-specific demethylase 4a
    Species: Homo sapiens [TaxId:9606]
    Gene: KDM4A, JHDM3A, JMJD2, JMJD2A, KIAA0677
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.06: d5tvsa_
  • Chain 'B':
    Compound: lysine-specific demethylase 4a
    Species: Homo sapiens [TaxId:9606]
    Gene: KDM4A, JHDM3A, JMJD2, JMJD2A, KIAA0677
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.06: d5tvsb_
  • Heterogens: NI, ZN

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >5tvsA (A:)
masesetlnpsarimtfyptmeefrnfsryiayiesqgahraglakvvppkewkprasyd
diddlvipapiqqlvtgqsglftqyniqkkamtvrefrkiansdkyctprysefeelerk
ywknltfnppiygadvngtlyekhvdewnigrlrtildlvekesgitiegvntpylyfgm
wktsfawhtedmdlysinylhfgepkswysvppehgkrlerlakgffpgsaqsceaflrh
kmtlisplmlkkygipfdkvtqeagefmitfpygyhagfnhgfncaestnfatrrwieyg
kqavlcscrkdmvkismdvfvrkfqperyklwkagkdntvidhtlptpeaaeflkesel

    Sequence, based on observed residues (ATOM records): (download) 
    >5tvsA (A:)
etlnpsarimtfyptmeefrnfsryiayiesqgahraglakvvppkewkprasyddiddl
vipapiqqlvtgqsglftqyniqkkamtvrefrkiansdkyctprysefeelerkywknl
tfnppiygadvngtlyekhvdewnigrlrtildlvekesgitiegvntpylyfgmwktsf
awhtedmdlysinylhfgepkswysvppehgkrlerlakgffpgsaqsceaflrhkmtli
splmlkkygipfdkvtqeagefmitfpygyhagfnhgfncaestnfatrrwieygkqavl
cscrkdmvkismdvfvrkfqperyklwkagkdntvidhtlptpeaaef

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >5tvsB (B:)
masesetlnpsarimtfyptmeefrnfsryiayiesqgahraglakvvppkewkprasyd
diddlvipapiqqlvtgqsglftqyniqkkamtvrefrkiansdkyctprysefeelerk
ywknltfnppiygadvngtlyekhvdewnigrlrtildlvekesgitiegvntpylyfgm
wktsfawhtedmdlysinylhfgepkswysvppehgkrlerlakgffpgsaqsceaflrh
kmtlisplmlkkygipfdkvtqeagefmitfpygyhagfnhgfncaestnfatrrwieyg
kqavlcscrkdmvkismdvfvrkfqperyklwkagkdntvidhtlptpeaaeflkesel

    Sequence, based on observed residues (ATOM records): (download) 
    >5tvsB (B:)
etlnpsarimtfyptmeefrnfsryiayiesqgahraglakvvppkewkprasyddiddl
vipapiqqlvtgqsglftqyniqkkamtvrefrkiansdkyctprysefeelerkywknl
tfnppiygadvngtlyekhvdewnigrlrtildlvekesgitiegvntpylyfgmwktsf
awhtedmdlysinylhfgepkswysvppehgkrlerlakgffpgsaqsceaflrhkmtli
splmlkkygipfdkvtqeagefmitfpygyhagfnhgfncaestnfatrrwieygkqavl
cscrkdmvkismdvfvrkfqperyklwkagkdntvidhtlptpeaaef