PDB entry 5tg8

View 5tg8 on RCSB PDB site
Description: Crystal structure of H15 hemagglutinin from A/shearwater/WA/2576/1979 H15N9 influenza virus
Class: viral protein
Keywords: Influenza virus, hemagglutinin, HA, H15N9, Receptor specificity, VIRAL PROTEIN
Deposited on 2016-09-27, released 2017-04-12
The last revision prior to the SCOPe 2.06 freeze date was dated 2017-04-12, with a file datestamp of 2017-04-07.
Experiment type: XRAY
Resolution: 3.1 Å
R-factor: N/A
AEROSPACI score: 0.12 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Hemagglutinin HA1 chain
    Species: Influenza A virus (A/shearWater/Australia/2576/1979(H15N9)) [TaxId:650409]
    Gene: HA
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.06: d5tg8a_
  • Chain 'B':
    Compound: Hemagglutinin HA2 chain
    Species: Influenza A virus [TaxId:650409]
    Gene: HA
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.06: d5tg8b_
  • Chain 'C':
    Compound: Hemagglutinin HA1 chain
    Species: Influenza A virus (A/shearWater/Australia/2576/1979(H15N9)) [TaxId:650409]
    Gene: HA
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.06: d5tg8c_
  • Chain 'D':
    Compound: Hemagglutinin HA2 chain
    Species: Influenza A virus [TaxId:650409]
    Gene: HA
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.06: d5tg8d_
  • Heterogens: NAG

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download)
    >5tg8A (A:)
    adpgdkiclghhavangtkvntltergvevvnatetveitgidkvctkgkkavdlgscgi
    lgtiigppqcdlhlefkadliierrnssdicypgrftneealrqiiresggidkesmgfr
    ysgirtdgatsackrtvssfysemkwlsssmnnqvfpqlnqtyrntrkepalivwgvhhs
    ssldeqnklygtgnklitvgsskyqqsfspspgarpkvngqagridfhwmlldpgdtvtf
    tfngafiapdratflrsnapsgieyngkslgiqsdaqidescegecfysggtinsplpfq
    nidsravgkcpryvkqsslplalgmknvpeki
    

    Sequence, based on observed residues (ATOM records): (download)
    >5tg8A (A:)
    dkiclghhavangtkvntltergvevvnatetveitgidkvctkgkkavdlgscgilgti
    igppqcdlhlefkadliierrnssdicypgrftneealrqiiresggidkesmgfrysgi
    rtdgatsackrtvssfysemkwlsssmnnqvfpqlnqtyrntrkepalivwgvhhsssld
    eqnklygtgnklitvgsskyqqsfspspgarpkvngqagridfhwmlldpgdtvtftfng
    afiapdratflrsnapsgieyngkslgiqsdaqidescegecfysggtinsplpfqnids
    ravgkcpryvkqsslplalgmknvpeki
    

  • Chain 'B':
    Sequence, based on SEQRES records: (download)
    >5tg8B (B:)
    rtrglfgaiagfiengweglidgwygfrhqnaqgqgtaadykstqaaidqitgklnrlie
    ktnkqfelidnefteveqqignvinwtrdslteiwsynaellvamenqhtidladsemnk
    lyervrrqlrenaeedgtgcfeifhrcddqcmesirnntynhteyrqealqnriminpvs
    gggglndifeaqk
    

    Sequence, based on observed residues (ATOM records): (download)
    >5tg8B (B:)
    gaiagfiengweglidgwygfrhqnaqgqgtaadykstqaaidqitgklnrliektnkqf
    elidnefteveqqignvinwtrdslteiwsynaellvamenqhtidladsemnklyervr
    rqlrenaeedgtgcfeifhrcddqcmesirnntynhteyrqealqnrim
    

  • Chain 'C':
    Sequence, based on SEQRES records: (download)
    >5tg8C (C:)
    adpgdkiclghhavangtkvntltergvevvnatetveitgidkvctkgkkavdlgscgi
    lgtiigppqcdlhlefkadliierrnssdicypgrftneealrqiiresggidkesmgfr
    ysgirtdgatsackrtvssfysemkwlsssmnnqvfpqlnqtyrntrkepalivwgvhhs
    ssldeqnklygtgnklitvgsskyqqsfspspgarpkvngqagridfhwmlldpgdtvtf
    tfngafiapdratflrsnapsgieyngkslgiqsdaqidescegecfysggtinsplpfq
    nidsravgkcpryvkqsslplalgmknvpeki
    

    Sequence, based on observed residues (ATOM records): (download)
    >5tg8C (C:)
    dkiclghhavangtkvntltergvevvnatetveitgidkvctkgkkavdlgscgilgti
    igppqcdlhlefkadliierrnssdicypgrftneealrqiiresggidkesmgfrysgi
    rtdgatsackrtvssfysemkwlsssmnnqvfpqlnqtyrntrkepalivwgvhhsssld
    eqnklygtgnklitvgsskyqqsfspspgarpkvngqagridfhwmlldpgdtvtftfng
    afiapdratflrsnapsgieyngkslgiqsdaqidescegecfysggtinsplpfqnids
    ravgkcpryvkqsslplalgmknvpeki
    

  • Chain 'D':
    Sequence, based on SEQRES records: (download)
    >5tg8D (D:)
    rtrglfgaiagfiengweglidgwygfrhqnaqgqgtaadykstqaaidqitgklnrlie
    ktnkqfelidnefteveqqignvinwtrdslteiwsynaellvamenqhtidladsemnk
    lyervrrqlrenaeedgtgcfeifhrcddqcmesirnntynhteyrqealqnriminpvs
    gggglndifeaqk
    

    Sequence, based on observed residues (ATOM records): (download)
    >5tg8D (D:)
    gaiagfiengweglidgwygfrhqnaqgqgtaadykstqaaidqitgklnrliektnkqf
    elidnefteveqqignvinwtrdslteiwsynaellvamenqhtidladsemnklyervr
    rqlrenaeedgtgcfeifhrcddqcmesirnntynhteyrqealqnrim