PDB entry 5t0d

View 5t0d on RCSB PDB site
Description: Crystal structure of H6 hemagglutinin G225D mutant from Taiwan (2013) H6N1 influenza virus in complex with 3'-SLN
Class: immune system
Keywords: Influenza virus, hemagglutinin, HA, Taiwan (2013) H6N1, Receptor specificity, IMMUNE SYSTEM
Deposited on 2016-08-15, released 2017-06-14
The last revision prior to the SCOPe 2.08 freeze date was dated 2020-07-29, with a file datestamp of 2020-07-04.
Experiment type: XRAY
Resolution: 2.86 Å
R-factor: N/A
AEROSPACI score: 0.21 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Hemagglutinin
    Species: H6N1 subtype [TaxId:119212]
    Gene: HA
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d5t0da_
  • Chain 'B':
    Compound: Hemagglutinin HA2 chain
    Species: H6N1 subtype [TaxId:119212]
    Gene: HA
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d5t0db_
  • Chain 'C':
    Compound: Hemagglutinin
    Species: H6N1 subtype [TaxId:119212]
    Gene: HA
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d5t0dc_
  • Chain 'D':
    Compound: Hemagglutinin HA2 chain
    Species: H6N1 subtype [TaxId:119212]
    Gene: HA
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d5t0dd_
  • Chain 'E':
    Compound: Hemagglutinin
    Species: H6N1 subtype [TaxId:119212]
    Gene: HA
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d5t0de_
  • Chain 'F':
    Compound: Hemagglutinin HA2 chain
    Species: H6N1 subtype [TaxId:119212]
    Gene: HA
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d5t0df_
  • Heterogens: NAG, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >5t0dA (A:)
adpgdkicigyhannsttqvdtlleknvtvthsvellenqkekrfckimnkapldlkdct
iegwilgnpkcdlllgdqswsyiverpnaqngicypgvlneleelkafigsgerverfem
fpkstwagvdtsrgvtnacpsytidssfyrnlvwivktdsatypvikgtynntgtqpily
fwgvhhpldttvqdnlygsgdkyvrmgtesmnfakspeiaarpavndqrsridyywsvlr
pgetlnvesngnliapwyaykfvstnkkgavfksdlpiencdatcqtitgvlrtnktfqn
vsplwigecpkyvkseslrlatglrnvpqiatr

    Sequence, based on observed residues (ATOM records): (download) 
    >5t0dA (A:)
pgdkicigyhannsttqvdtlleknvtvthsvellenqkekrfckimnkapldlkdctie
gwilgnpkcdlllgdqswsyiverpnaqngicypgvlneleelkafigsgerverfemfp
kstwagvdtsrgvtnacpsytidssfyrnlvwivktdsatypvikgtynntgtqpilyfw
gvhhpldttvqdnlygsgdkyvrmgtesmnfakspeiaarpavndqrsridyywsvlrpg
etlnvesngnliapwyaykfvstnkkgavfksdlpiencdatcqtitgvlrtnktfqnvs
plwigecpkyvkseslrlatglrnvpqiat

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >5t0dB (B:)
gifgaiagfieggwtgmidgwygyhhensqgsgyaadrestqkaidgitnkvnsiinkmn
tqfeavdhefsnlerrignlnkrmedgfldvwtynaellvllenertldlhdanvknlye
kvksqlrdnandlgngcfefwhkcdnecmesvkngtydypkyqkesklnrqgiegrlvpr

    Sequence, based on observed residues (ATOM records): (download) 
    >5t0dB (B:)
gifgaiagfieggwtgmidgwygyhhensqgsgyaadrestqkaidgitnkvnsiinkmn
tqfeavdhefsnlerrignlnkrmedgfldvwtynaellvllenertldlhdanvknlye
kvksqlrdnandlgngcfefwhkcdnecmesvkngtydypkyqkesklnrqgi

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >5t0dC (C:)
adpgdkicigyhannsttqvdtlleknvtvthsvellenqkekrfckimnkapldlkdct
iegwilgnpkcdlllgdqswsyiverpnaqngicypgvlneleelkafigsgerverfem
fpkstwagvdtsrgvtnacpsytidssfyrnlvwivktdsatypvikgtynntgtqpily
fwgvhhpldttvqdnlygsgdkyvrmgtesmnfakspeiaarpavndqrsridyywsvlr
pgetlnvesngnliapwyaykfvstnkkgavfksdlpiencdatcqtitgvlrtnktfqn
vsplwigecpkyvkseslrlatglrnvpqiatr

    Sequence, based on observed residues (ATOM records): (download) 
    >5t0dC (C:)
gdkicigyhannsttqvdtlleknvtvthsvellenqkekrfckimnkapldlkdctieg
wilgnpkcdlllgdqswsyiverpnaqngicypgvlneleelkafigsgerverfemfpk
stwagvdtsrgvtnacpsytidssfyrnlvwivktdsatypvikgtynntgtqpilyfwg
vhhpldttvqdnlygsgdkyvrmgtesmnfakspeiaarpavndqrsridyywsvlrpge
tlnvesngnliapwyaykfvskgavfksdlpiencdatcqtitgvlrtnktfqnvsplwi
gecpkyvkseslrlatglrnvpqia

  • Chain 'D':
    Sequence, based on SEQRES records: (download) 
    >5t0dD (D:)
gifgaiagfieggwtgmidgwygyhhensqgsgyaadrestqkaidgitnkvnsiinkmn
tqfeavdhefsnlerrignlnkrmedgfldvwtynaellvllenertldlhdanvknlye
kvksqlrdnandlgngcfefwhkcdnecmesvkngtydypkyqkesklnrqgiegrlvpr

    Sequence, based on observed residues (ATOM records): (download) 
    >5t0dD (D:)
gifgaiagfieggwtgmidgwygyhhensqgsgyaadrestqkaidgitnkvnsiinkmn
tqfeavdhefsnlerrignlnkrmedgfldvwtynaellvllenertldlhdanvknlye
kvksqlrdnandlgngcfefwhkcdnecmesvkngtydypkyqkesklnrqgi

  • Chain 'E':
    Sequence, based on SEQRES records: (download) 
    >5t0dE (E:)
adpgdkicigyhannsttqvdtlleknvtvthsvellenqkekrfckimnkapldlkdct
iegwilgnpkcdlllgdqswsyiverpnaqngicypgvlneleelkafigsgerverfem
fpkstwagvdtsrgvtnacpsytidssfyrnlvwivktdsatypvikgtynntgtqpily
fwgvhhpldttvqdnlygsgdkyvrmgtesmnfakspeiaarpavndqrsridyywsvlr
pgetlnvesngnliapwyaykfvstnkkgavfksdlpiencdatcqtitgvlrtnktfqn
vsplwigecpkyvkseslrlatglrnvpqiatr

    Sequence, based on observed residues (ATOM records): (download) 
    >5t0dE (E:)
pgdkicigyhannsttqvdtlleknvtvthsvellenqkekrfckimnkapldlkdctie
gwilgnpkcdlllgdqswsyiverpnaqngicypgvlneleelkafigsgerverfemfp
kstwagvdtsrgvtnacpsytidssfyrnlvwivktdsatypvikgtynntgtqpilyfw
gvhhpldttvqdnlygsgdkyvrmgtesmnfakspeiaarpavndqrsridyywsvlrpg
etlnvesngnliapwyaykfvskkgavfksdlpiencdatcqtitgvlrtnktfqnvspl
wigecpkyvkseslrlatglrnvpq

  • Chain 'F':
    Sequence, based on SEQRES records: (download) 
    >5t0dF (F:)
gifgaiagfieggwtgmidgwygyhhensqgsgyaadrestqkaidgitnkvnsiinkmn
tqfeavdhefsnlerrignlnkrmedgfldvwtynaellvllenertldlhdanvknlye
kvksqlrdnandlgngcfefwhkcdnecmesvkngtydypkyqkesklnrqgiegrlvpr

    Sequence, based on observed residues (ATOM records): (download) 
    >5t0dF (F:)
gifgaiagfieggwtgmidgwygyhhensqgsgyaadrestqkaidgitnkvnsiinkmn
tqfeavdhefsnlerrignlnkrmedgfldvwtynaellvllenertldlhdanvknlye
kvksqlrdnandlgngcfefwhkcdnecmesvkngtydypkyqkesklnrqg