PDB entry 5sx4
View 5sx4 on RCSB PDB site
Description: Crystal Structure of panitumumab in complex with epidermal growth factor receptor domain 3.
Class: transferase/immune system
Keywords: Cetuximab, panitumumab, EGFR, Vectibix, Erbitux, TRANSFERASE-IMMUNE SYSTEM complex
Deposited on
2016-08-09, released
2016-10-05
The last revision prior to the SCOPe 2.06 freeze date was dated
2016-10-05, with a file datestamp of
2016-09-30.
Experiment type: XRAY
Resolution: 2.8 Å
R-factor: N/A
AEROSPACI score: 0.17
(click here for full SPACI score report)
Chains and heterogens:
- Chain 'H':
Compound: Panitumumab Fab Heavy Chain
Species: Homo sapiens [TaxId:9606]
Database cross-references and differences (RAF-indexed):
- Chain 'I':
Compound: Panitumumab Fab Light Chain
Species: Homo sapiens [TaxId:9606]
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.06: d5sx4i1, d5sx4i2 - Chain 'J':
Compound: Panitumumab Fab Heavy Chain
Species: Homo sapiens [TaxId:9606]
Database cross-references and differences (RAF-indexed):
- Chain 'L':
Compound: Panitumumab Fab Light Chain
Species: Homo sapiens [TaxId:9606]
Database cross-references and differences (RAF-indexed):
- Chain 'M':
Compound: Epidermal growth factor receptor
Species: Homo sapiens [TaxId:9606]
Gene: EGFR, ERBB, ERBB1, HER1
Database cross-references and differences (RAF-indexed):
- Uniprot P00533 (Start-194)
- conflict (21)
- conflict (113)
- expression tag (195)
Domains in SCOPe 2.06: d5sx4m1, d5sx4m2, d5sx4m3 - Chain 'N':
Compound: Epidermal growth factor receptor
Species: Homo sapiens [TaxId:9606]
Gene: EGFR, ERBB, ERBB1, HER1
Database cross-references and differences (RAF-indexed):
- Uniprot P00533 (4-194)
- expression tag (3)
- conflict (21)
- conflict (113)
Domains in SCOPe 2.06: d5sx4n1, d5sx4n2, d5sx4n3 - Heterogens: SO4, GOL, 1PE, EDO, HOH
PDB Chain Sequences:
- Chain 'H':
No sequence available.
- Chain 'I':
Sequence, based on SEQRES records: (download)
>5sx4I (I:)
diqmtqspsslsasvgdrvtitcqasqdisnylnwyqqkpgkapklliydasnletgvps
rfsgsgsgtdftftisslqpediatyfcqhfdhlplafgggtkveikrtvaapsvfifpp
sdeqlksgtasvvcllnnfypreakvqwkvdnalqsgnsqesvteqdskdstyslsstlt
lskadyekhkvyacevthqglsspvtksfnrgec
Sequence, based on observed residues (ATOM records): (download)
>5sx4I (I:)
diqmtqspsslsasvgdrvtitcqasqdisnylnwyqqkpgkapklliydasnletgvps
rfsgsgsgtdftftisslqpediatyfcqhfdhlplafgggtkveikrtvaapsvfifpp
sdeqlksgtasvvcllnnfypreakvqwkvdnalqsgnsqesvteqdskdstyslsstlt
lskadyekhkvyacevthqglsspvtksfnrge
- Chain 'J':
No sequence available.
- Chain 'L':
No sequence available.
- Chain 'M':
Sequence, based on SEQRES records: (download)
>5sx4M (M:)
leekkvcngigigefkdslsidatnikhfknctsisgdlhilpvafrgdsfthtppldpq
eldilktvkeitgflliqawpenrtdlhafenleiirgrtkqhgqfslavvslditslgl
rslkeisdgdviisgnknlcyantinwkklfgtsgqktkiisnrgensckatgqvchalc
spegcwgpeprdcvshhhhhh
Sequence, based on observed residues (ATOM records): (download)
>5sx4M (M:)
vcngigigefkdslsidatnikhfknctsisgdlhilpvafrgdsfthtppldpqeldil
ktvkeitgflliqawpenrtdlhafenleiirgrtkqhgqfslavvslditslglrslke
isdgdviisgnknlcyantinwkklfgtsgqktkiisnrgensckatgqvchalcspegc
wgpeprdcvsh
- Chain 'N':
Sequence, based on SEQRES records: (download)
>5sx4N (N:)
leekkvcngigigefkdslsidatnikhfknctsisgdlhilpvafrgdsfthtppldpq
eldilktvkeitgflliqawpenrtdlhafenleiirgrtkqhgqfslavvslditslgl
rslkeisdgdviisgnknlcyantinwkklfgtsgqktkiisnrgensckatgqvchalc
spegcwgpeprdcvshhhhhh
Sequence, based on observed residues (ATOM records): (download)
>5sx4N (N:)
kkvcnfkdslsidatnikhfknctsisgdlhilpvafrgdsfthtppldpqeldilktvk
eitgflliqawpenrtdlhafenleiirgrtkqhgqfslavvslditslglrslkeisdg
dviisgnknlcyantinwkklfgtsgqktkiisnrgensckatgqvchalcspegcwgpe
prdcvs