PDB entry 5r16

View 5r16 on RCSB PDB site
Description: PanDDA analysis group deposition -- Auto-refined data of Aar2/RNaseH for ground state model 21, DMSO-free
Class: splicing
Keywords: FragMAX, FragMAXapp, fragment screening, RNaseH like domain, VHS like domain, U5 snRNP assembly, SPLICING
Deposited on 2020-03-30, released 2020-06-03
The last revision prior to the SCOPe 2.07 freeze date was dated 2020-06-03, with a file datestamp of 2020-05-29.
Experiment type: XRAY
Resolution: 1.84 Å
R-factor: N/A
AEROSPACI score: 0.35 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Pre-mRNA-splicing factor 8
    Species: Saccharomyces cerevisiae (strain ATCC 204508 / S288c) [TaxId:559292]
    Gene: PRP8, DBF3, DNA39, RNA8, SLT21, USA2, YHR165C
    Database cross-references and differences (RAF-indexed):
    • Uniprot P33334 (3-End)
      • expression tag (0-2)
    Domains in SCOPe 2.07: d5r16a1, d5r16a2
  • Chain 'B':
    Compound: A1 cistron-splicing factor AAR2
    Species: Saccharomyces cerevisiae (strain ATCC 204508 / S288c) [TaxId:559292]
    Gene: AAR2, YBL074C, YBL06.06, YBL0611
    Database cross-references and differences (RAF-indexed):
    • Uniprot P32357 (4-307)
      • conflict (160)
    Domains in SCOPe 2.07: d5r16b1, d5r16b2
  • Heterogens: HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >5r16A (A:)
gamnssnyaelfnndiklfvddtnvyrvtvhktfegnvatkaingciftlnpktghlflk
iihtsvwagqkrlsqlakwktaeevsalvrslpkeeqpkqiivtrkamldplevhmldfp
niairptelrlpfsaamsidklsdvvmkatepqmvlfniyddwldrissytafsrltlll
ralktneesakmillsdptitiksyhlwpsftdeqwitiesqmrdlilteygrkynvnis
altqteikdiilgqnika

    Sequence, based on observed residues (ATOM records): (download) 
    >5r16A (A:)
gamnssnyaelfnndiklfvddtnvyrvtvhktfegnvatkaingciftlnpktghlflk
iihtsvwagqkrlsqlakwktaeevsalvrslpkeeqpkqiivtrkamldplevhmldfp
niairptelrlpfsaamsidklsdvvmkatepqmvlfniyddwldrissytafsrltlll
ralktneesakmillsdptitiksyhlwpsftdeqwitiesqmrdlilteygrkynv

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >5r16B (B:)
gamamntvpftsapievtigidqysfnvkenqpfhgikdipighvhvihfqhadnssmry
gywfdcrmgnfyiqydpkdglykmmeerdgakfenivhnfkerqmmvsypkideddtwyn
ltefvqmdkirkivrkdenqfsyvdssmttvqenelsssssdpahslnytvinfksreai
rpghemedfldksyylntvmlqgifknssnyfgelqfaflnamffgnygsslqwhamiel
icssatvpkhmldkldeilyyqiktlpeqysdillnervwniclyssfqknslhntekim
enkypell

    Sequence, based on observed residues (ATOM records): (download) 
    >5r16B (B:)
mntvpftsapievtigidqysfnvkenqpfhgikdipighvhvihfqhadnssmrygywf
dcrmgnfyiqydpkdglykmmeerdgakfenivhnfkerqmmvsypkideddtwynltef
vqmdkirkivrkdenqfsyvdssmttvqenelsdpahslnytvinfksreairpghemed
fldksyylntvmlqgifknssnyfgelqfaflnamffgnygsslqwhamielicssatvp
khmldkldeilyyqiktlpeqysdillnervwniclyssfqknslhntekimenkypell