PDB entry 5oym

View 5oym on RCSB PDB site
Description: HIV Integrase Binding Domain of Lens Epithelium-Derived Growth Factor
Class: transcription
Keywords: Integrase binding, transciptional co-activator, domain swap, TRANSCRIPTION
Deposited on 2017-09-11, released 2018-03-07
The last revision prior to the SCOPe 2.08 freeze date was dated 2018-04-18, with a file datestamp of 2018-04-13.
Experiment type: XRAY
Resolution: 2.05 Å
R-factor: N/A
AEROSPACI score: 0.31 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: PC4 and SFRS1-interacting protein
    Species: Homo sapiens [TaxId:9606]
    Gene: PSIP1, DFS70, LEDGF, PSIP2
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d5oyma_
  • Chain 'B':
    Compound: PC4 and SFRS1-interacting protein
    Species: Homo sapiens [TaxId:9606]
    Gene: PSIP1, DFS70, LEDGF, PSIP2
    Database cross-references and differences (RAF-indexed):
    • Uniprot O75475 (24-End)
      • expression tag (23)
    Domains in SCOPe 2.08: d5oymb1, d5oymb2
  • Chain 'C':
    Compound: PC4 and SFRS1-interacting protein
    Species: Homo sapiens [TaxId:9606]
    Gene: PSIP1, DFS70, LEDGF, PSIP2
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d5oymc_
  • Chain 'D':
    Compound: PC4 and SFRS1-interacting protein
    Species: Homo sapiens [TaxId:9606]
    Gene: PSIP1, DFS70, LEDGF, PSIP2
    Database cross-references and differences (RAF-indexed):
    • Uniprot O75475 (24-End)
      • expression tag (23)
    Domains in SCOPe 2.08: d5oymd1, d5oymd2
  • Chain 'E':
    Compound: PC4 and SFRS1-interacting protein
    Species: Homo sapiens [TaxId:9606]
    Gene: PSIP1, DFS70, LEDGF, PSIP2
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d5oyme_
  • Chain 'F':
    Compound: PC4 and SFRS1-interacting protein
    Species: Homo sapiens [TaxId:9606]
    Gene: PSIP1, DFS70, LEDGF, PSIP2
    Database cross-references and differences (RAF-indexed):
    • Uniprot O75475 (24-End)
      • expression tag (23)
    Domains in SCOPe 2.08: d5oymf1, d5oymf2
  • Chain 'G':
    Compound: PC4 and SFRS1-interacting protein
    Species: Homo sapiens [TaxId:9606]
    Gene: PSIP1, DFS70, LEDGF, PSIP2
    Database cross-references and differences (RAF-indexed):
    • Uniprot O75475 (24-110)
      • expression tag (23)
    Domains in SCOPe 2.08: d5oymg1, d5oymg2
  • Chain 'H':
    Compound: PC4 and SFRS1-interacting protein
    Species: Homo sapiens [TaxId:9606]
    Gene: PSIP1, DFS70, LEDGF, PSIP2
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d5oymh_
  • Heterogens: HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download)
    >5oymA (A:)
    ggsmgsggggsggggsggggaaametsmdsrlqrihaeiknslkidnldvnrciealdel
    aslqvtmqqaqkhtemittlkkirrfkvsqvimekstmlynkfknmflvge
    

    Sequence, based on observed residues (ATOM records): (download)
    >5oymA (A:)
    etsmdsrlqrihaeiknslkidnldvnrciealdelaslqvtmqqaqkhtemittlkkir
    rfkvsqvimekstmlynkfknmflv
    

  • Chain 'B':
    Sequence, based on SEQRES records: (download)
    >5oymB (B:)
    ggsmgsggggsggggsggggaaametsmdsrlqrihaeiknslkidnldvnrciealdel
    aslqvtmqqaqkhtemittlkkirrfkvsqvimekstmlynkfknmflvge
    

    Sequence, based on observed residues (ATOM records): (download)
    >5oymB (B:)
    metsmdsrlqrihaeiknslkidnldvnrciealdelaslqvtmqqaqkhtemittlkki
    rrfkvsqvimekstmlynkfknmf
    

  • Chain 'C':
    Sequence, based on SEQRES records: (download)
    >5oymC (C:)
    ggsmgsggggsggggsggggaaametsmdsrlqrihaeiknslkidnldvnrciealdel
    aslqvtmqqaqkhtemittlkkirrfkvsqvimekstmlynkfknmflvge
    

    Sequence, based on observed residues (ATOM records): (download)
    >5oymC (C:)
    etsmdsrlqrihaeiknslkidnldvnrciealdelaslqvtmqqaqkhtemittlkkir
    rfkvsqvimekstmlynkfknmflv
    

  • Chain 'D':
    Sequence, based on SEQRES records: (download)
    >5oymD (D:)
    ggsmgsggggsggggsggggaaametsmdsrlqrihaeiknslkidnldvnrciealdel
    aslqvtmqqaqkhtemittlkkirrfkvsqvimekstmlynkfknmflvge
    

    Sequence, based on observed residues (ATOM records): (download)
    >5oymD (D:)
    metsmdsrlqrihaeiknslkidnldvnrciealdelaslqvtmqqaqkhtemittlkki
    rrfkvsqvimekstmlynkfknmflvg
    

  • Chain 'E':
    Sequence, based on SEQRES records: (download)
    >5oymE (E:)
    ggsmgsggggsggggsggggaaametsmdsrlqrihaeiknslkidnldvnrciealdel
    aslqvtmqqaqkhtemittlkkirrfkvsqvimekstmlynkfknmflvge
    

    Sequence, based on observed residues (ATOM records): (download)
    >5oymE (E:)
    etsmdsrlqrihaeiknslkidnldvnrciealdelaslqvtmqqaqkhtemittlkkir
    rfkvsqvimekstmlynkfknmflvg
    

  • Chain 'F':
    Sequence, based on SEQRES records: (download)
    >5oymF (F:)
    ggsmgsggggsggggsggggaaametsmdsrlqrihaeiknslkidnldvnrciealdel
    aslqvtmqqaqkhtemittlkkirrfkvsqvimekstmlynkfknmflvge
    

    Sequence, based on observed residues (ATOM records): (download)
    >5oymF (F:)
    metsmdsrlqrihaeiknslkidnldvnrciealdelaslqvtmqqaqkhtemittlkki
    rrfkvsqvimekstmlynkfknmflvg
    

  • Chain 'G':
    Sequence, based on SEQRES records: (download)
    >5oymG (G:)
    ggsmgsggggsggggsggggaaametsmdsrlqrihaeiknslkidnldvnrciealdel
    aslqvtmqqaqkhtemittlkkirrfkvsqvimekstmlynkfknmflvge
    

    Sequence, based on observed residues (ATOM records): (download)
    >5oymG (G:)
    metsmdsrlqrihaeiknslkidnldvnrciealdelaslqvtmqqaqkhtemittlkki
    rrfkvsqvimekstmlynkfknmflvge
    

  • Chain 'H':
    Sequence, based on SEQRES records: (download)
    >5oymH (H:)
    ggsmgsggggsggggsggggaaametsmdsrlqrihaeiknslkidnldvnrciealdel
    aslqvtmqqaqkhtemittlkkirrfkvsqvimekstmlynkfknmflvge
    

    Sequence, based on observed residues (ATOM records): (download)
    >5oymH (H:)
    etsmdsrlqrihaeiknslkidnldvnrciealdelaslqvtmqqaqkhtemittlkkir
    rfkvsqvimekstmlynkfknmflv