PDB entry 5oyl

View 5oyl on RCSB PDB site
Description: vsv g cr2
Class: viral protein
Keywords: c, VIRAL PROTEIN
Deposited on 2017-09-11, released 2018-03-21
The last revision prior to the SCOPe 2.07 freeze date was dated 2018-03-21, with a file datestamp of 2018-03-16.
Experiment type: XRAY
Resolution: 2.25 Å
R-factor: N/A
AEROSPACI score: 0.25 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Glycoprotein
    Species: Recombinant vesicular stomatitis Indiana virus rVSV-G/GFP [TaxId:582817]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d5oyla_
  • Chain 'D':
    Compound: low-density lipoprotein receptor
    Species: Homo sapiens [TaxId:9606]
    Gene: LDLR
    Database cross-references and differences (RAF-indexed):
    • Uniprot P01130 (4-45)
      • expression tag (0-3)
    Domains in SCOPe 2.07: d5oyld1, d5oyld2
  • Heterogens: NAG, CA, GOL, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence; same for both SEQRES and ATOM records: (download)
    >5oylA (A:)
    kftivfphnqkgnwknvpsnyhycpsssdlnwhndligtalqvkmpkshkaiqadgwmch
    askwvttcdfrwygpkyithsirsftpsveqckesieqtkqgtwlnpgfppqscgyatvt
    daeavivqvtphhvlvdeytgewvdsqfingkcsnyicptvhnsttwhsdykvkglcdsn
    lismditffsedgelsslgkegtgfrsnyfayetggkackmqyckhwgvrlpsgvwfema
    dkdlfaaarfpecpegssisapsqtsvdvsliqdverildyslcqetwskiraglpispv
    dlsylapknpgtgpaftiingtlkyfetryirvdiaapilsrmvgmisgttterelwddw
    apyedveigpngvlrtssgykfplymighgmldsdlhlsskaqvfehphi
    

  • Chain 'D':
    Sequence; same for both SEQRES and ATOM records: (download)
    >5oylD (D:)
    gplgsvtcksgdfscggrvnrcipqfwrcdgqvdcdngsdeqgcpp