PDB entry 5oyl

View 5oyl on RCSB PDB site
Description: vsv g cr2
Class: viral protein
Keywords: c, VIRAL PROTEIN
Deposited on 2017-09-11, released 2018-03-21
The last revision prior to the SCOPe 2.08 freeze date was dated 2020-07-29, with a file datestamp of 2020-06-29.
Experiment type: XRAY
Resolution: 2.25 Å
R-factor: N/A
AEROSPACI score: 0.32 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Glycoprotein
    Species: Recombinant vesicular stomatitis Indiana virus rVSV-G/GFP [TaxId:582817]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d5oyla_
  • Chain 'D':
    Compound: low-density lipoprotein receptor
    Species: Homo sapiens [TaxId:9606]
    Gene: LDLR
    Database cross-references and differences (RAF-indexed):
    • Uniprot P01130 (4-45)
      • expression tag (0-3)
    Domains in SCOPe 2.08: d5oyld1, d5oyld2
  • Heterogens: NAG, CA, GOL, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >5oylA (A:)
kftivfphnqkgnwknvpsnyhycpsssdlnwhndligtalqvkmpkshkaiqadgwmch
askwvttcdfrwygpkyithsirsftpsveqckesieqtkqgtwlnpgfppqscgyatvt
daeavivqvtphhvlvdeytgewvdsqfingkcsnyicptvhnsttwhsdykvkglcdsn
lismditffsedgelsslgkegtgfrsnyfayetggkackmqyckhwgvrlpsgvwfema
dkdlfaaarfpecpegssisapsqtsvdvsliqdverildyslcqetwskiraglpispv
dlsylapknpgtgpaftiingtlkyfetryirvdiaapilsrmvgmisgttterelwddw
apyedveigpngvlrtssgykfplymighgmldsdlhlsskaqvfehphi

  • Chain 'D':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >5oylD (D:)
gplgsvtcksgdfscggrvnrcipqfwrcdgqvdcdngsdeqgcpp