PDB entry 5oy0

View 5oy0 on RCSB PDB site
Description: Structure of synechocystis photosystem I trimer at 2.5A resolution
Class: photosynthesis
Keywords: photosystem I, reaction center, photosynthesis, cyanobacteria, electron transfer chain, synechocystis
Deposited on 2017-09-07, released 2018-02-21
The last revision prior to the SCOPe 2.07 freeze date was dated 2018-02-21, with a file datestamp of 2018-02-16.
Experiment type: XRAY
Resolution: 2.5 Å
R-factor: N/A
AEROSPACI score: 0.2 (click here for full SPACI score report)

Chains and heterogens:

• Chain '0':
  Compound: Photosystem I reaction center subunit XI
  Species: Synechocystis sp. (strain PCC 6803 / Kazusa) [TaxId:1111708]
  Database cross-references and differences (RAF-indexed):
  • Uniprot P37277 (0-153)
  Domains in SCOPe 2.07: d5oy00_
• Chain '1':
  Compound: photosystem I p700 chlorophyll a apoprotein a1
  Species: Synechocystis sp. (strain PCC 6803 / Kazusa) [TaxId:1111708]
  Database cross-references and differences (RAF-indexed):
  • Uniprot P29254 (0-743)
  Domains in SCOPe 2.07: d5oy01_
• Chain '2':
  Compound: photosystem I p700 chlorophyll a apoprotein a2
  Species: Synechocystis sp. (strain PCC 6803 / Kazusa) [TaxId:1111708]
  Database cross-references and differences (RAF-indexed):
  • Uniprot P29255 (0-730)
  Domains in SCOPe 2.07: d5oy02_
• Chain '3':
  Compound: photosystem I iron-sulfur center
  Species: Synechocystis sp. (strain PCC 6803 / Kazusa) [TaxId:1111708]
  Database cross-references and differences (RAF-indexed):
  • Uniprot P32422 (0-79)
  Domains in SCOPe 2.07: d5oy03_
• Chain '4':
  Compound: Photosystem I reaction center subunit II
  Species: Synechocystis sp. (strain PCC 6803 / Kazusa) [TaxId:1111708]
  Database cross-references and differences (RAF-indexed):
  • Uniprot P19569 (0-139)
  Domains in SCOPe 2.07: d5oy04_
• Chain '5':
  Compound: photosystem I reaction center subunit IV
  Species: Synechocystis sp. (strain PCC 6803 / Kazusa) [TaxId:1111708]
  Database cross-references and differences (RAF-indexed):
  • Uniprot P12975 (0-68)
  Domains in SCOPe 2.07: d5oy05_
• Chain '6':
  Compound: Photosystem I reaction center subunit III
  Species: Synechocystis sp. (strain PCC 6803 / Kazusa) [TaxId:1111708]
  Database cross-references and differences (RAF-indexed):
  • Uniprot P29256 (0-142)
  Domains in SCOPe 2.07: d5oy06_
• Chain '7':
  Compound: Photosystem I reaction center subunit IX
  Species: Synechocystis sp. (strain PCC 6803 / Kazusa) [TaxId:1111708]
  Database cross-references and differences (RAF-indexed):
  • Uniprot Q55329 (0-39)
  Domains in SCOPe 2.07: d5oy07_
• Chain '8':
  Compound: Photosystem I reaction center subunit PsaK 2
  Species: Synechocystis sp. (strain PCC 6803 / Kazusa) [TaxId:1111708]
  Database cross-references and differences (RAF-indexed):
  • Uniprot P74564 (0-78)
  Domains in SCOPe 2.07: d5oy08_
• Chain '9':
  Compound: Photosystem I reaction center subunit XII
  Species: Synechocystis sp. (strain PCC 6803 / Kazusa) [TaxId:1111708]
  Database cross-references and differences (RAF-indexed):
  • Uniprot P72986 (0-30)
• Chain 'A':
  Compound: photosystem I p700 chlorophyll a apoprotein a1
  Species: Synechocystis sp. (strain PCC 6803 / Kazusa) [TaxId:1111708]
  Database cross-references and differences (RAF-indexed):
  • Uniprot P29254 (0-750)
  Domains in SCOPe 2.07: d5oy0a_
• Chain 'B':
  Compound: photosystem I p700 chlorophyll a apoprotein a2
  Species: Synechocystis sp. (strain PCC 6803 / Kazusa) [TaxId:1111708]
  Database cross-references and differences (RAF-indexed):
  • Uniprot P29255 (0-730)
• Chain 'C':
  Compound: photosystem I iron-sulfur center
  Species: Synechocystis sp. (strain PCC 6803 / Kazusa) [TaxId:1111708]
  Database cross-references and differences (RAF-indexed):
  • Uniprot P32422 (0-79)
• Chain 'D':
  Compound: Photosystem I reaction center subunit II
  Species: Synechocystis sp. (strain PCC 6803 / Kazusa) [TaxId:1111708]
  Database cross-references and differences (RAF-indexed):
  • Uniprot P19569 (0-140)
  Domains in SCOPe 2.07: d5oy0d_
• Chain 'E':
  Compound: photosystem I reaction center subunit IV
  Species: Synechocystis sp. (strain PCC 6803 / Kazusa) [TaxId:1111708]
  Database cross-references and differences (RAF-indexed):
  • Uniprot P12975 (0-68)
• Chain 'F':
  Compound: Photosystem I reaction center subunit III
  Species: Synechocystis sp. (strain PCC 6803 / Kazusa) [TaxId:1111708]
  Database cross-references and differences (RAF-indexed):
  • Uniprot P29256 (0-142)
  Domains in SCOPe 2.07: d5oy0f_
• Chain 'I':
  Compound: Photosystem I reaction center subunit VIII
  Species: Synechocystis sp. (strain PCC 6803 / Kazusa) [TaxId:1111708]
  Database cross-references and differences (RAF-indexed):
  • Uniprot Q55330 (0-39)
  Domains in SCOPe 2.07: d5oy0i_
• Chain 'J':
  Compound: Photosystem I reaction center subunit IX
  Species: Synechocystis sp. (strain PCC 6803 / Kazusa) [TaxId:1111708]
  Database cross-references and differences (RAF-indexed):
  • Uniprot Q55329 (0-39)
  Domains in SCOPe 2.07: d5oy0j_
• Chain 'K':
  Compound: Photosystem I reaction center subunit PsaK 2
  Species: Synechocystis sp. (strain PCC 6803 / Kazusa) [TaxId:1111708]
  Database cross-references and differences (RAF-indexed):
  • Uniprot P74564 (0-79)
• Chain 'L':
  Compound: Photosystem I reaction center subunit XI
  Species: Synechocystis sp. (strain PCC 6803 / Kazusa) [TaxId:1111708]
  Database cross-references and differences (RAF-indexed):
  • Uniprot P37277 (0-156)
  Domains in SCOPe 2.07: d5oy0l_
• Chain 'M':
  Compound: Photosystem I reaction center subunit XII
  Species: Synechocystis sp. (strain PCC 6803 / Kazusa) [TaxId:1111708]
  Database cross-references and differences (RAF-indexed):
  • Uniprot P72986 (0-30)
• Chain 'a':
  Compound: photosystem I p700 chlorophyll a apoprotein a1
  Species: Synechocystis sp. (strain PCC 6803 / Kazusa) [TaxId:1111708]
  Database cross-references and differences (RAF-indexed):
  • Uniprot P29254 (0-750)
• Chain 'b':
  Compound: photosystem I p700 chlorophyll a apoprotein a2
  Species: Synechocystis sp. (strain PCC 6803 / Kazusa) [TaxId:1111708]
  Database cross-references and differences (RAF-indexed):
  • Uniprot P29255 (0-728)
  Domains in SCOPe 2.07: d5oy0b_
• Chain 'c':
  Compound: photosystem I iron-sulfur center
  Species: Synechocystis sp. (strain PCC 6803 / Kazusa) [TaxId:1111708]
  Database cross-references and differences (RAF-indexed):
  • Uniprot P32422 (0-80)
  Domains in SCOPe 2.07: d5oy0c_
• Chain 'd':
  Compound: Photosystem I reaction center subunit II
  Species: Synechocystis sp. (strain PCC 6803 / Kazusa) [TaxId:1111708]
  Database cross-references and differences (RAF-indexed):
  • Uniprot P19569 (0-140)
• Chain 'e':
  Compound: photosystem I reaction center subunit IV
  Species: Synechocystis sp. (strain PCC 6803 / Kazusa) [TaxId:1111708]
  Database cross-references and differences (RAF-indexed):
  • Uniprot P12975 (0-67)
  Domains in SCOPe 2.07: d5oy0e_
• Chain 'f':
  Compound: Photosystem I reaction center subunit III
  Species: Synechocystis sp. (strain PCC 6803 / Kazusa) [TaxId:1111708]
  Database cross-references and differences (RAF-indexed):
  • Uniprot P29256 (0-142)
• Chain 'h':
  Compound: Photosystem I reaction center subunit VIII
  Species: Synechocystis sp. (strain PCC 6803 / Kazusa) [TaxId:1111708]
  Database cross-references and differences (RAF-indexed):
  • Uniprot Q55330 (0-37)
  Domains in SCOPe 2.07: d5oy0h_
• Chain 'i':
  Compound: Photosystem I reaction center subunit VIII
  Species: Synechocystis sp. (strain PCC 6803 / Kazusa) [TaxId:1111708]
  Database cross-references and differences (RAF-indexed):
  • Uniprot Q55330 (0-39)
• Chain 'j':
  Compound: Photosystem I reaction center subunit IX
  Species: Synechocystis sp. (strain PCC 6803 / Kazusa) [TaxId:1111708]
  Database cross-references and differences (RAF-indexed):
  • Uniprot Q55329 (0-39)
• Chain 'k':
  Compound: Photosystem I reaction center subunit PsaK 2
  Species: Synechocystis sp. (strain PCC 6803 / Kazusa) [TaxId:1111708]
  Database cross-references and differences (RAF-indexed):
  • Uniprot P74564 (0-77)
  Domains in SCOPe 2.07: d5oy0k_
• Chain 'l':
  Compound: Photosystem I reaction center subunit XI
  Species: Synechocystis sp. (strain PCC 6803 / Kazusa) [TaxId:1111708]
  Database cross-references and differences (RAF-indexed):
  • Uniprot P37277 (0-156)
• Chain 'm':
  Compound: Photosystem I reaction center subunit XII
  Species: Synechocystis sp. (strain PCC 6803 / Kazusa) [TaxId:1111708]
  Database cross-references and differences (RAF-indexed):
  • Uniprot P72986 (0-30)
• Heterogens: CLA, PQN, SF4, BCR, LHG, LMG, ACT, 45D, CL, ECH, SQD, CA, MG, C7Z, LMT, EQ3, DGD, HOH

PDB Chain Sequences:

• Chain '0':
  Sequence; same for both SEQRES and ATOM records: (download)
  

  >5oy00 (0:)
  snqvvqayngdpfvghlstpisdsaftrtfignlpayrkglspilrglevgmahgyflig
  pwtllgplrdseyqyiggligalalilvataalssyglvtfqgeqgsgdtlqtadgwsqf
  aagffvggmggafvayfllenlsvvdgifrglfn
  

  
  
• Chain '1':
  Sequence; same for both SEQRES and ATOM records: (download)
  

  >5oy01 (1:)
  reakakvsvdnnpvptsfekwgkpghfdrtlargpktttwiwnlhanahdfdsqtsdled
  vsrkifsahfghlavvfvwlsgmyfhgakfsnyegwladpthikpsaqvvwpivgqgiln
  gdvgggfhgiqitsglfylwrasgftdsyqlyctaigglvmaalmlfagwfhyhvkapkl
  ewfqnvesmmnhhlagllglgslgwaghqihvsmpinklldagvapkdiplphefileps
  kmaelypsfaqgltpfftlnwgvysdfltfkgglnpvtgglwlsdtahhhlaiavlfiia
  ghmyrtnwgighsmkeileahkgpftgeghkglyeilttswhaqlainlallgsltiiva
  qhmyamppypyqaidyatqlslfthhmwiggflivgagahgaifmvrdydpaknvnnlld
  rmlrhrdaiishlnwvciflgfhsfglyihndtmralgrpqdmfsdtaiqlqpifaqwvq
  hlhtlapgatapnalatasyafggetiavagkvammpitlgtadfmvhhihaftihvtal
  illkgvlyarssrlvpdkanlgfrfpcdgpgrggtcqvsgwdhvflglfwmynslsivif
  hfswkmqsdvwgtvspdgsvthvtlgnfaqsaitingwlrdflwaqaanvinsygsalsa
  ygimflaghfvfafslmflfsgrgywqeliesivwahnklnvapaiqpralsiiqgravg
  vahyllggivttwafflarslsig
  

  
  
• Chain '2':
  Sequence; same for both SEQRES and ATOM records: (download)
  

  >5oy02 (2:)
  matkfpkfsqdlaqdpttrriwygiatahdfethdgmteenlyqkifashfghiaiiflw
  tsgtlfhvawqgnfeqwikdplnirpiahaiwdphfgegavnaftqagasnpvniaysgv
  yhwfytigmttnqelysgavfllvlaslflfagwlhlqpkfrpslawfknaesrlnhhla
  glfgvsslawaghlvhvaipeargqhvgwdnflstpphpaglmpfftgnwgvyaadpdta
  ghifgtsegagtailtflggfhpqteslwltdiahhhlaiavifiiaghmyrtnwgighs
  ikeilnahkgpltgaghtnlydtinnslhfqlglalaslgvitslvaqhmyslpsyafia
  qdhttqaalythhqyiagflmvgafahgaiffvrdydpvankdnvlarmlehkealishl
  swvslflgfhtlglyvhndvvvafgtpekqiliepvfaqwiqatsgkalygfdvllsnpd
  siasttgaawlpgwldainsgtnslfltigpgdflvhhaialglhttalilikgaldarg
  sklmpdkkdfgysfpcdgpgrggtcdisawdafylamfwmlntlgwltfywhwkhlgvws
  gnvaqfnenstylmgwfrdylwansaqlingynpygvnnlsvwawmflfghlvwatgfmf
  liswrgywqelietivwahertplanlvrwkdkpvalsivqarlvglahftvgyvltyaa
  fliastagkfg
  

  
  
• Chain '3':
  Sequence; same for both SEQRES and ATOM records: (download)
  

  >5oy03 (3:)
  shsvkiydtcigctqcvracpldvlemvpwdgckaaqiassprtedcvgckrcetacptd
  flsirvylgaettrsmglay
  

  
  
• Chain '4':
  Sequence; same for both SEQRES and ATOM records: (download)
  

  >5oy04 (4:)
  telsgqppkfggstggllskanreekyaitwtsaseqvfemptggaaimnegenllylar
  keqclalgtqlrtkfkpkiqdykiyrvypsgevqylhpadgvfpekvnegreaqgtktrr
  igqnpepvtikfsgkapyev
  

  
  
• Chain '5':
  Sequence; same for both SEQRES and ATOM records: (download)
  

  >5oy05 (5:)
  alnrgdkvrikrtesywygdvgtvasveksgilypvivrfdrvnyngfsgsasgvntnnf
  aenelelvq
  

  
  
• Chain '6':
  Sequence; same for both SEQRES and ATOM records: (download)
  

  >5oy06 (6:)
  addfanltpcsenpaylaksknflnttndpnsgkiraeryasalcgpegyphlivdgrft
  hagdflipsilflyiagwigwvgrsylieiresknpemqevvinvplaikkmlggflwpl
  aavgeytsgklvmkdseiptspr
  

  
  
• Chain '7':
  Sequence; same for both SEQRES and ATOM records: (download)
  

  >5oy07 (7:)
  mdglksflstapvmimalltftagiliefnrfypdllfhp
  

  
  
• Chain '8':
  Sequence; same for both SEQRES and ATOM records: (download)
  

  >5oy08 (8:)
  aqaspttagwslsvgiimclcnvfafvigyfaiqktgkgkdlalpqlaskktfglpella
  tmsfghilgagmvlglass
  

  
  
• Chain '9':
  No sequence available.
  
  
• Chain 'A':
  Sequence; same for both SEQRES and ATOM records: (download)
  

  >5oy0A (A:)
  mtisppereakakvsvdnnpvptsfekwgkpghfdrtlargpktttwiwnlhanahdfds
  qtsdledvsrkifsahfghlavvfvwlsgmyfhgakfsnyegwladpthikpsaqvvwpi
  vgqgilngdvgggfhgiqitsglfylwrasgftdsyqlyctaigglvmaalmlfagwfhy
  hvkapklewfqnvesmmnhhlagllglgslgwaghqihvsmpinklldagvapkdiplph
  efilepskmaelypsfaqgltpfftlnwgvysdfltfkgglnpvtgglwlsdtahhhlai
  avlfiiaghmyrtnwgighsmkeileahkgpftgeghkglyeilttswhaqlainlallg
  sltiivaqhmyamppypyqaidyatqlslfthhmwiggflivgagahgaifmvrdydpak
  nvnnlldrmlrhrdaiishlnwvciflgfhsfglyihndtmralgrpqdmfsdtaiqlqp
  ifaqwvqhlhtlapgatapnalatasyafggetiavagkvammpitlgtadfmvhhihaf
  tihvtalillkgvlyarssrlvpdkanlgfrfpcdgpgrggtcqvsgwdhvflglfwmyn
  slsivifhfswkmqsdvwgtvspdgsvthvtlgnfaqsaitingwlrdflwaqaanvins
  ygsalsaygimflaghfvfafslmflfsgrgywqeliesivwahnklnvapaiqpralsi
  iqgravgvahyllggivttwafflarslsig
  

  
  
• Chain 'B':
  No sequence available.
  
  
• Chain 'C':
  No sequence available.
  
  
• Chain 'D':
  Sequence; same for both SEQRES and ATOM records: (download)
  

  >5oy0D (D:)
  mtelsgqppkfggstggllskanreekyaitwtsaseqvfemptggaaimnegenllyla
  rkeqclalgtqlrtkfkpkiqdykiyrvypsgevqylhpadgvfpekvnegreaqgtktr
  rigqnpepvtikfsgkapyev
  

  
  
• Chain 'E':
  No sequence available.
  
  
• Chain 'F':
  Sequence; same for both SEQRES and ATOM records: (download)
  

  >5oy0F (F:)
  addfanltpcsenpaylaksknflnttndpnsgkiraeryasalcgpegyphlivdgrft
  hagdflipsilflyiagwigwvgrsylieiresknpemqevvinvplaikkmlggflwpl
  aavgeytsgklvmkdseiptspr
  

  
  
• Chain 'I':
  Sequence; same for both SEQRES and ATOM records: (download)
  

  >5oy0I (I:)
  mdgsyaasylpwilipmvgwlfpavtmgllfihiesegeg
  

  
  
• Chain 'J':
  Sequence; same for both SEQRES and ATOM records: (download)
  

  >5oy0J (J:)
  mdglksflstapvmimalltftagiliefnrfypdllfhp
  

  
  
• Chain 'K':
  No sequence available.
  
  
• Chain 'L':
  Sequence; same for both SEQRES and ATOM records: (download)
  

  >5oy0L (L:)
  maesnqvvqayngdpfvghlstpisdsaftrtfignlpayrkglspilrglevgmahgyf
  ligpwtllgplrdseyqyiggligalalilvataalssyglvtfqgeqgsgdtlqtadgw
  sqfaagffvggmggafvayfllenlsvvdgifrglfn
  

  
  
• Chain 'M':
  No sequence available.
  
  
• Chain 'a':
  No sequence available.
  
  
• Chain 'b':
  Sequence; same for both SEQRES and ATOM records: (download)
  

  >5oy0b (b:)
  tkfpkfsqdlaqdpttrriwygiatahdfethdgmteenlyqkifashfghiaiiflwts
  gtlfhvawqgnfeqwikdplnirpiahaiwdphfgegavnaftqagasnpvniaysgvyh
  wfytigmttnqelysgavfllvlaslflfagwlhlqpkfrpslawfknaesrlnhhlagl
  fgvsslawaghlvhvaipeargqhvgwdnflstpphpaglmpfftgnwgvyaadpdtagh
  ifgtsegagtailtflggfhpqteslwltdiahhhlaiavifiiaghmyrtnwgighsik
  eilnahkgpltgaghtnlydtinnslhfqlglalaslgvitslvaqhmyslpsyafiaqd
  httqaalythhqyiagflmvgafahgaiffvrdydpvankdnvlarmlehkealishlsw
  vslflgfhtlglyvhndvvvafgtpekqiliepvfaqwiqatsgkalygfdvllsnpdsi
  asttgaawlpgwldainsgtnslfltigpgdflvhhaialglhttalilikgaldargsk
  lmpdkkdfgysfpcdgpgrggtcdisawdafylamfwmlntlgwltfywhwkhlgvwsgn
  vaqfnenstylmgwfrdylwansaqlingynpygvnnlsvwawmflfghlvwatgfmfli
  swrgywqelietivwahertplanlvrwkdkpvalsivqarlvglahftvgyvltyaafl
  iastagkfg
  

  
  
• Chain 'c':
  Sequence; same for both SEQRES and ATOM records: (download)
  

  >5oy0c (c:)
  mshsvkiydtcigctqcvracpldvlemvpwdgckaaqiassprtedcvgckrcetacpt
  dflsirvylgaettrsmglay
  

  
  
• Chain 'd':
  No sequence available.
  
  
• Chain 'e':
  Sequence; same for both SEQRES and ATOM records: (download)
  

  >5oy0e (e:)
  alnrgdkvrikrtesywygdvgtvasveksgilypvivrfdrvnyngfsgsasgvntnnf
  aenelelv
  

  
  
• Chain 'f':
  No sequence available.
  
  
• Chain 'h':
  Sequence; same for both SEQRES and ATOM records: (download)
  

  >5oy0h (h:)
  mdgsyaasylpwilipmvgwlfpavtmgllfihieseg
  

  
  
• Chain 'i':
  No sequence available.
  
  
• Chain 'j':
  No sequence available.
  
  
• Chain 'k':
  Sequence; same for both SEQRES and ATOM records: (download)
  

  >5oy0k (k:)
  aqaspttagwslsvgiimclcnvfafvigyfaiqktgkgkdlalpqlaskktfglpella
  tmsfghilgagmvlglas
  

  
  
• Chain 'l':
  No sequence available.
  
  
• Chain 'm':
  No sequence available.