PDB entry 5oxs
View 5oxs on RCSB PDB site
Description: Crystal structure of human lung surfactant protein D trimeric fragment with bound ligand Salmonella enterica Minnesota R5 oligosaccharide
Class: surfactant protein
Keywords: trimeric recombinant collectin fragment, neck+CRD, alpha-helical coiled coil, carbohydrate recognition domain, lectin, sugar binding protein, SURFACTANT PROTEIN
Deposited on
2017-09-07, released
2018-06-20
The last revision prior to the SCOPe 2.07 freeze date was dated
2018-06-20, with a file datestamp of
2018-06-15.
Experiment type: XRAY
Resolution: 1.65 Å
R-factor: N/A
AEROSPACI score: 0.42
(click here for full SPACI score report)
Chains and heterogens:
- Chain 'A':
Compound: Pulmonary surfactant-associated protein D
Species: Homo sapiens [TaxId:9606]
Gene: SFTPD, COLEC7, PSPD, SFTP4
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.07: d5oxsa1, d5oxsa2 - Chain 'B':
Compound: Pulmonary surfactant-associated protein D
Species: Homo sapiens [TaxId:9606]
Gene: SFTPD, COLEC7, PSPD, SFTP4
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.07: d5oxsb1, d5oxsb2 - Chain 'C':
Compound: Pulmonary surfactant-associated protein D
Species: Homo sapiens [TaxId:9606]
Gene: SFTPD, COLEC7, PSPD, SFTP4
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.07: d5oxsc1, d5oxsc2 - Heterogens: CA, K5B, GMH, GLC, HOH
PDB Chain Sequences:
- Chain 'A':
Sequence, based on SEQRES records: (download)
>5oxsA (A:)
gspglkgdkgipgdkgakgesglpdvaslrqqvealqgqvqhlqaafsqykkvelfpngq
svgekifktagfvkpfteaqllctqaggqlasprsaaenaalqqlvvakneaaflsmtds
ktegkftyptgeslvysnwapgepnddggsedcveiftngkwndracgekrlvvcef
Sequence, based on observed residues (ATOM records): (download)
>5oxsA (A:)
vaslrqqvealqgqvqhlqaafsqykkvelfpngqsvgekifktagfvkpfteaqllctq
aggqlasprsaaenaalqqlvvakneaaflsmtdsktegkftyptgeslvysnwapgepn
ddggsedcveiftngkwndracgekrlvvcef
- Chain 'B':
Sequence, based on SEQRES records: (download)
>5oxsB (B:)
gspglkgdkgipgdkgakgesglpdvaslrqqvealqgqvqhlqaafsqykkvelfpngq
svgekifktagfvkpfteaqllctqaggqlasprsaaenaalqqlvvakneaaflsmtds
ktegkftyptgeslvysnwapgepnddggsedcveiftngkwndracgekrlvvcef
Sequence, based on observed residues (ATOM records): (download)
>5oxsB (B:)
dvaslrqqvealqgqvqhlqaafsqykkvelfpngqsvgekifktagfvkpfteaqllct
qaggqlasprsaaenaalqqlvvakneaaflsmtdsktegkftyptgeslvysnwapgep
nddggsedcveiftngkwndracgekrlvvcef
- Chain 'C':
Sequence, based on SEQRES records: (download)
>5oxsC (C:)
gspglkgdkgipgdkgakgesglpdvaslrqqvealqgqvqhlqaafsqykkvelfpngq
svgekifktagfvkpfteaqllctqaggqlasprsaaenaalqqlvvakneaaflsmtds
ktegkftyptgeslvysnwapgepnddggsedcveiftngkwndracgekrlvvcef
Sequence, based on observed residues (ATOM records): (download)
>5oxsC (C:)
dvaslrqqvealqgqvqhlqaafsqykkvelfpngqsvgekifktagfvkpfteaqllct
qaggqlasprsaaenaalqqlvvakneaaflsmtdsktegkftyptgeslvysnwapgep
nddggsedcveiftngkwndracgekrlvvcef