PDB entry 5ox2

View 5ox2 on RCSB PDB site
Description: Crystal structure of thymoligase, a substrate-tailored peptiligase variant
Class: ligase
Keywords: peptide ligase, subtilisin, LIGASE
Deposited on 2017-09-05, released 2018-01-10
The last revision prior to the SCOPe 2.08 freeze date was dated 2018-04-18, with a file datestamp of 2018-04-13.
Experiment type: XRAY
Resolution: 2.24 Å
R-factor: N/A
AEROSPACI score: 0.25 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: subtilisin bpn'
    Species: Bacillus amyloliquefaciens [TaxId:1390]
    Gene: APR
    Database cross-references and differences (RAF-indexed):
    • Uniprot P00782 (0-265)
      • engineered mutation (1-2)
      • engineered mutation (4)
      • engineered mutation (8)
      • engineered mutation (30)
      • engineered mutation (42)
      • engineered mutation (49)
      • engineered mutation (73)
      • engineered mutation (146)
      • engineered mutation (156)
      • engineered mutation (159)
      • engineered mutation (178-179)
      • engineered mutation (196)
      • engineered mutation (202)
      • engineered mutation (207-208)
      • engineered mutation (211-212)
      • engineered mutation (215)
      • engineered mutation (244)
      • engineered mutation (261)
    Domains in SCOPe 2.08: d5ox2a_
  • Chain 'P':
    Compound: Fragment of prodomain
    Species: Bacillus amyloliquefaciens [TaxId:1390]
    Gene: APR
    Database cross-references and differences (RAF-indexed):
    • PDB 5OX2 (0-8)
  • Heterogens: SO4, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >5ox2A (A:)
akcvsygvaqikapalhsqgytgsnvkvavldsgidsshpdlnvaggasfvpsetnpfqd
nnshgthvagtvlavapsaslyavkvlgadgsgqyswiingiewaiannmdvinmslggp
sgsaalkaavdkavasgvvvvaaagnngtsgssstvdypakypsviavgavdssnqrapw
ssvgpeldvmapgvsicstlpggkygarsgtcgasnhvagaaalilskhpnwtntqvrss
lentatklgdsfyygkglinveaaaqhhhhhh

    Sequence, based on observed residues (ATOM records): (download) 
    >5ox2A (A:)
akcvsygvaqikapalhsqgytgsnvkvavldsgidsshpdlnvaggasfvpsetnpfqd
nnshgthvagtvlavapsaslyavkvlgadgsgqyswiingiewaiannmdvinmslggp
sgsaalkaavdkavasgvvvvaaagnngtsgssstvdypakypsviavgavdssnqrapw
ssvgpeldvmapgvsicstlpggkygarsgtcgasnhvagaaalilskhpnwtntqvrss
lentatklgdsfyygkglinveaaaq

  • Chain 'P':
    No sequence available.