PDB entry 5otj
View 5otj on RCSB PDB site
Description: Monomeric polcalcin (Phl p 7) in complex with two identical allergen-specific antibodies
Class: immune system
Keywords: Fab, allergen, antibody, IgE, polcalcin, IMMUNE SYSTEM
Deposited on
2017-08-22, released
2018-09-05
The last revision prior to the SCOPe 2.08 freeze date was dated
2020-03-11, with a file datestamp of
2020-03-06.
Experiment type: XRAY
Resolution: 2.35 Å
R-factor: N/A
AEROSPACI score: 0.24
(click here for full SPACI score report)
Chains and heterogens:
- Chain 'A':
Compound: 102.1F10 Fab light chain
Species: Homo sapiens [TaxId:9606]
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.08: d5otja1, d5otja2 - Chain 'B':
Compound: 102.1F10 Fab heavy chain
Species: Homo sapiens [TaxId:9606]
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.08: d5otjb_ - Chain 'C':
Compound: Polcalcin Phl p 7
Species: PHLEUM PRATENSE [TaxId:15957]
Database cross-references and differences (RAF-indexed):
- Chain 'D':
Compound: Polcalcin Phl p 7
Species: PHLEUM PRATENSE [TaxId:15957]
Database cross-references and differences (RAF-indexed):
- Chain 'H':
Compound: 102.1F10 Fab heavy chain
Species: Homo sapiens [TaxId:9606]
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.08: d5otjh_ - Chain 'L':
Compound: 102.1F10 Fab light chain
Species: Homo sapiens [TaxId:9606]
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.08: d5otjl1, d5otjl2 - Heterogens: EDO, CA, HOH
PDB Chain Sequences:
- Chain 'A':
Sequence, based on SEQRES records: (download)
>5otjA (A:)
esaltqppsvsgapgqrvsisctggssnfgagydvhwyqqlpatapklliygnnnrpsgv
pdrfsgsksgtsaslaitglqaedegdyfcqsfdtslsgwifgggtkltvlgqpkaapsv
tlfppsseelqankatlvclisdfypgavtvawkadsspvkagvetttpskqsnnkyaas
sylsltpeqwkshrsyscqvthegstvektvaptecs
Sequence, based on observed residues (ATOM records): (download)
>5otjA (A:)
esaltqppsvsgapgqrvsisctggssnfgagydvhwyqqlpatapklliygnnnrpsgv
pdrfsgsksgtsaslaitglqaedegdyfcqsfdtslsgwifgggtkltvlgqpkaapsv
tlfppsseelqankatlvclisdfypgavtvawkadsspvkagvetttpskqsnnkyaas
sylsltpeqwkshrsyscqvthegstvektvapt
- Chain 'B':
Sequence, based on SEQRES records: (download)
>5otjB (B:)
qvqlvqsgaevrnpgasvkvsckasgytftsyaihwvrqapghrlewvgrintdngntky
sqkfhgrvalsrdtsasttymdlsslnsedtavyycarafyyssgvmfdswgqgalvtvs
sastkgpsvfplapsskstsggtaalgclvkdyfpepvtvswnsgaltsgvhtfpavlqs
sglyslssvvtvpssslgtqtyicnvnhkpsntkvdkkvepkschhhhhh
Sequence, based on observed residues (ATOM records): (download)
>5otjB (B:)
qvqlvqsgaevrnpgasvkvsckasgytftsyaihwvrqapghrlewvgrintdngntky
sqkfhgrvalsrdtsasttymdlsslnsedtavyycarafyyssgvmfdswgqgalvtvs
sastkgpsvfplapsskstsggtaalgclvkdyfpepvtvswnsgaltsgvhtfpavlqs
sglyslssvvtvpssslgtqtyicnvnhkpsntkvdkkvepk
- Chain 'C':
No sequence available.
- Chain 'D':
No sequence available.
- Chain 'H':
Sequence, based on SEQRES records: (download)
>5otjH (H:)
qvqlvqsgaevrnpgasvkvsckasgytftsyaihwvrqapghrlewvgrintdngntky
sqkfhgrvalsrdtsasttymdlsslnsedtavyycarafyyssgvmfdswgqgalvtvs
sastkgpsvfplapsskstsggtaalgclvkdyfpepvtvswnsgaltsgvhtfpavlqs
sglyslssvvtvpssslgtqtyicnvnhkpsntkvdkkvepkschhhhhh
Sequence, based on observed residues (ATOM records): (download)
>5otjH (H:)
qvqlvqsgaevrnpgasvkvsckasgytftsyaihwvrqapghrlewvgrintdngntky
sqkfhgrvalsrdtsasttymdlsslnsedtavyycarafyyssgvmfdswgqgalvtvs
sastkgpsvfplapsskstsggtaalgclvkdyfpepvtvswnsgaltsgvhtfpavlqs
sglyslssvvtvpssslgtqtyicnvnhkpsntkvdkkvepk
- Chain 'L':
Sequence, based on SEQRES records: (download)
>5otjL (L:)
esaltqppsvsgapgqrvsisctggssnfgagydvhwyqqlpatapklliygnnnrpsgv
pdrfsgsksgtsaslaitglqaedegdyfcqsfdtslsgwifgggtkltvlgqpkaapsv
tlfppsseelqankatlvclisdfypgavtvawkadsspvkagvetttpskqsnnkyaas
sylsltpeqwkshrsyscqvthegstvektvaptecs
Sequence, based on observed residues (ATOM records): (download)
>5otjL (L:)
esaltqppsvsgapgqrvsisctggssnfgagydvhwyqqlpatapklliygnnnrpsgv
pdrfsgsksgtsaslaitglqaedegdyfcqsfdtslsgwifgggtkltvlgqpkaapsv
tlfppsseelqankatlvclisdfypgavtvawkadsspvkagvetttpskqsnnkyaas
sylsltpeqwkshrsyscqvthegstvektvapt